RNA id: TU299641


Basic Information

Item Value
RNA id TU299641
length 4430
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G263516
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45825683 ~ 45830272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAGTTCATTGAAGATTTCAGTATACCATTGAGTGTTTTATCTACATAATGACTCATTTGGATTAATATGACATGCTAAATCTTTGTAACAGAAGACTTACCAATGAGTATTTTGGTTTTCTGTTGGTAGGGAAGAACTGTTCTGCATTTGTGTAACAAATGTCCTAAAATGGGGGCAAAACATCAGTGTTTGTACTGTAAATAGGACCCTTTGATATATATCTGGATAGCATTGGGCCAGCTGCTTTAAAAAGGGAGGATATGGATTGAATTTCTAACCTGCCAGAGTTTCTCAATTCAATGAGTAATGGCTTTGGTTAACACTACCATTAGAAACATACTACAGTGCACTGGACACTTCAAATTGCTGGTAAATAAAAGGATTGATCAAACTCTGAATCCAATACTTGGAATTACAGTGGCAGTAAAAAGCAAATACATTGTGTAAAATACAAAATAGGAAACGTCGATCACGCACACTATTACCATGTGTAAACAAAGCTAATAACAGAACAaattatatcacacacacacagagatacaaagCAAACAAATTGAGATCTCTATTTGAGCTTCAGCCTTCTGAATTTGCATAAATGTAACCTCAGTCTCTGGTGAAGTAGACACGCATTAAGAATTGTGGACGCAATTACAAAACCACTtggggggggaaaaaaaatcaaGACTTAAGGGAATTACGTTATTTATTTTAAGTAGGTTTTCATGTCATGATAGACTGTGTCCATTTTGTTTGtcagtataatacaatataaatcTAATGTGGTGTATTAACACACAAAACAGTAATGCAAGTTAAGTCAAAGCAGTTCATGTCACATTCAGTGTTGTTACACAGGATATTTCCTTGGTATAAGttttaaataaatataatttAGAGCATGTATTCAACTTGCAACACGTCACAAAAATGTAATCCTTGTTCTTGATTGGACAGTCAATTTTTTTGTTGTAATCTATACAGTATTGCACATATTTTACTTAAACTCACATTTCAAACTCAGGTTTCTAGTACCTGCTGCATCCACTCAAAAGGCCTCTGGTTGCACAATACTGAGTGGGAATTGGGGTGTGCTTGATAGCAAACCATTAAATATTGAGGGCTACAATGTGATACAaataataatacttatcAACatgaaataaaaaatttaaaaaaacttcCATAAATGTTGCAGGGAAATATCAAATGTAATTTCAAACTacgtacactaccggtcaacatttttagaacatctaatcattcaagggtttttcttaatttttactattttctacattgtagaatagtgaagacatcacaactatgaaataacacatatggaatcacttagtaacccccccaaaaaagtgttaaaaaatatgagattcttcaaagtagccaaccgttgccttgatgacagctttgcactcttggcattttctcaaccagcttcacctggaatgattttaacagtcttgaaggagtcccacatatgctgagcatttgttggctgcttttccttcactctgcagtgcaactcatcccaaaccgtctcaatttgtttgaggttgggggattgtggaagccaggtcatctgatggagcactccatcagtctccttggtcaaatagcccttacacagcctggaggtttgttgggtcattgtcctgttgaaaaacaaaattatagtcccacgaagcgcaaaccagatgggatggtgtatcactgcagaatgctgtgggagccatgctggttaagtgtaccttgaattctaaatatatcagAGTGTCACCTGCAAACTACtctcacaccataacacctccgccatcatgctttatggtgggaaatacacatgctgagatcattcgttcacccaCACCATGTCTCACAAAGATAAGGCGGTTGGAACTAGaattctccaatttggactccagaccaaaggaccaatttccaccggtctaatgtccattgcttgtgtttcttggcccaagcaagtctcttcttattggtgttcaattcgaccatgaaaggcctgattcacagctgatgttgagatgtgagatgagatgtgtctgttacttgaactcagaagcatgtatttgggctgcaatttcggaGGCtagtaactaatgaacttatcctctacagcagagccAACTCTGGGTCTTACATTCCTTTGCCAGTCctcatgagccagtttcatcatagtgcttgatggttatTGCAACtggacttgaagaaactttcaaagttcttgacattttccagattactttcagacacgaaggtcagtcaatgatgGACTGTttatttatctttgcttatttgagctgttcttgccataacatggaatgctcttttaccaaatagggccaccTTCTGTATTACCACCCCCccaacaacacaactgattggctcacattaaggaaagaaattccacaaattaacaaaggcacacctgttaattgaaatgcattccaggtgactacctcgtgaagctggttgagagagtcaagagtgtgcaaaactgtcaaggcaaagggtgggtatttgaagaatctcaaatatattttgatttgtttaacatgattccatgtgtgttacttcatagttgatgtgttcactattattctacaatgtagaaaatagtacaaatgagtaagtgttctaaactttgactggtagtgtatattcaGGTATATTCTGATGTAATAGaaatgtaatgtaacaatgttgaCTGCCAACTTCTACAGTACATACCACAAttacatttatttgacctttatttaactaggcaagtcaggtaagaacaaattcttatttttaataacTGCAGTCTTGTTCAACTGATTTCAATGGAAGAGCGGGCATGGAGTACCAtctgaaattgtgtttttatttaatttaaggaaagtcagttaagaacaaattcttaattgtAATTGAGGGCCTaggcacagtgggttaactgccttgttcaggggcagaacgacagatgtttaccttgtcagctcggggattcgatcaagcaaccttttggttactggcccaacgctctaaccactaggctacctgccactccgtCTGACTTTTCTGCCGCTCTTTCGGCGCGGAACGGGTGAAGAGCGTATCCGTTTCATGGAGCGTAAGAGCAATTATTCCCCTGTCGGGAGAAATGGGCACGCAGGTTGTTGGTCACGTTAGAACAGACCCAGGGTCTGTTTCTGTGGCGGCCGAAACGCTAAGGCTCATGGTTAGTCGTTTTTGGTGATCTTTGAAACCCGGAACAGACGGCAAAAACACAACTTCTCAACACGGGCAATTCTTCTTACGCCACTTCGATtactttttcgtagcaggttaggagaacttacacagCAGGGTGGGAGGTTTAAGGTAGCAAGTAAGGAGCCTGAGGAGACGGGTTAGCGAACATGCTCTCCTAACCTGGTACGAAAATCACTTTAGAGTGTCCCTTCTCGACACAGAGGTTGAAACATTCATAACCGATGGGCACTACAATGTACAGATTTATTTGCAATCTCGGGGGGAAAAAATATAACATACGTTGCACAGTAATATAGCTAACATCATGGTTTATATTAAGTTTGAGAGGACTTGGAGACAGGAAATCTTAAGACACCAGTCCACCGAGTTAACCGAGTAGGCATGAGTAAATTAGTACTGCAACGGACGTAAAAGCtctatatttaaccagagatcACTTTTTTTCCTCTCCAAATAGCCCACTGTAAAACTAAGGCAAGTGACATTTTGTCTTTAGACAACGTTCAAATTTGCCTCGACTCTTGTGTTCCATATGAACATGTGCATTTGCTGggtacaacaaaaaaaaagaaaccaaGCCAAGCGTCACACATTTCTTCTCCAAATTCCCTTTCCCCTCCATGTCTCGTGTGTGGCGGGATCACACAAGCTCCCGTTGGGCCCACAGCAACAAATGCCTATAAAACACGTATCTAACGGATTGGATACACAAGCTACATTCCATGCCAAATGAACACAGTTACAAATTCTAAATGGACTGGTTGATTGAAGTTGGACAATGTGTTCCAGGAACAAGCTGCAGTTTTGGAATAGTTGTGTCCTGACTATTTCCGCTTAAGTTACTTTGCGAACTGTTGGTGCCATTTAGAATTTGTTAGCCTTGCCTATAACCCCCCCTAAACATACAGGTTCCACACTTAACATCTGCAAAACATTAGTTTGATGACAAAGAGCGTATTTTCATCTGAATAAACAAGTATATGCCTACTCGACAAACAGATGTGGCCATAATGCATCACCATGCAGTGTTCAATGGGAGTGTTCATCCATTAAGAAACGTGTCAAATGATCACTGGTGATAACTGTTCGACATGCAATGCGCATCACTTTGCACGGGCAACTTTTTTTCCCATTTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299569 lncRNA upstream 135825 45689470 ~ 45689858 (+) True G263453
TU299515 lncRNA upstream 181289 45644193 ~ 45644394 (+) True G263399
TU299492 lncRNA upstream 201190 45624277 ~ 45624493 (+) True G263376
TU299488 lncRNA upstream 202377 45622998 ~ 45623306 (+) True G263372
TU299478 lncRNA upstream 208334 45617138 ~ 45617349 (+) True G263362
TU299674 lncRNA downstream 3363 45833635 ~ 45833881 (+) True G263549
TU299673 lncRNA downstream 4005 45834277 ~ 45836050 (+) True G263548
TU299675 lncRNA downstream 10262 45840534 ~ 45840763 (+) True G263550
TU299677 lncRNA downstream 11931 45842203 ~ 45842458 (+) True G263552
TU299678 lncRNA downstream 12582 45842854 ~ 45843067 (+) True G263553
XM_021596998.2 mRNA upstream 2382 45726239 ~ 45823301 (+) True asic4a
XM_021596999.2 mRNA upstream 4392 45726237 ~ 45821291 (+) False asic4a
XM_036974276.1 mRNA upstream 4408 45726237 ~ 45821275 (+) False asic4a
XM_021596996.2 mRNA upstream 245680 45571665 ~ 45580003 (+) False LOC110520030
XM_036974278.1 mRNA downstream 21910 45852182 ~ 45884194 (+) True LOC110504149
XM_021597002.2 mRNA downstream 73393 45903665 ~ 45933022 (+) True LOC110520033
XM_021597003.2 mRNA downstream 177927 46008199 ~ 46010647 (+) True LOC110520034
XR_005046468.1 mRNA downstream 202493 46032765 ~ 46043845 (+) True LOC118957146
XM_036974285.1 mRNA downstream 511576 46341848 ~ 46441801 (+) False LOC110520040
TU298041 other upstream 1300275 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1573132 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5373503 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other upstream 5373503 40440069 ~ 40452180 (+) True LOC110519969
TU290915 other upstream 6157595 39659059 ~ 39668088 (+) True LOC110519960
TU299672 other downstream 8649 45838921 ~ 45839480 (+) True G263547
TU299841 other downstream 103847 45934119 ~ 45934418 (+) True G263710
TU299866 other downstream 245212 46075484 ~ 46079425 (+) True G263733
TU299995 other downstream 353862 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 1000736 46831008 ~ 46832134 (+) False LOC110520046

Expression Profile