RNA id: TU299767


Basic Information

Item Value
RNA id TU299767
length 645
lncRNA type intronic
GC content 0.38
exon number 1
gene id G263640
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45834306 ~ 45834950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGACGgcctatttaaaacaagttgttttGATTTTATAATCGTTCACTCGCTTTTTAAGCCGTATCAGTAGTGACTttaatcttgcttattgacaatGTTTGGCATGTCCATCATTGAGACGTGGCAGGCGtaatgctattttacagttgGCCTAGCCAATATATCAATGAAAAATGCTATGTTCAACAATGCATTTCCATATTGAAGCCGTGCAATTACTTCTTAGAACAATGTGCCttgcaaacatgttcaacatATTTAGCAAATATGGGACAAGCCTACATATATtttgtttctgtaggctatgtaACAAAGTAGGCTATAACAAACTAACATTCAAATCAGCGTTGATGACAACGCAATACATAAAAGTCCGTAAATgcacaacttgaagcaaccacctatttagccatggagcaggttctgattggccagtgaggggtcaAGCCTCCACCTACAACttatttattcatcaaaacccagccctttcacGCCACTGCGGCCATAATTCCAGCTGTGAAAATACCAAGAATATAGCACTATTGACAGCGCTAACATTTACCATTTGCCTTAGATTTGATGAAATGGAACCCAAAGACTTAACTCAGTCTTCTGTTTGTTTTCACCCAATTTCCCATGTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299489 lncRNA downstream 210859 45622987 ~ 45623447 (-) True G263373
TU299448 lncRNA downstream 242823 45591259 ~ 45591483 (-) True G263332
TU299384 lncRNA downstream 263814 45531611 ~ 45570492 (-) True G263273
TU299406 lncRNA downstream 326738 45507246 ~ 45507568 (-) True G263293
TU299222 lncRNA downstream 537853 45294739 ~ 45296453 (-) True G263122
TU299771 lncRNA upstream 9133 45844083 ~ 45844346 (-) True G263644
TU300453 lncRNA upstream 49266 45884216 ~ 45884464 (-) True G264287
TU300491 lncRNA upstream 97418 45932368 ~ 45933032 (-) True G264322
TU300492 lncRNA upstream 98096 45933046 ~ 45933276 (-) True G264323
TU300493 lncRNA upstream 98338 45933288 ~ 45933769 (-) True G264324
XM_036974264.1 mRNA downstream 246635 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_036974256.1 mRNA downstream 246781 45580103 ~ 45587525 (-) False si:ch1073-416j23.1
XM_021596995.2 mRNA downstream 246903 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
XM_036974236.1 mRNA downstream 267260 45539844 ~ 45567046 (-) True LOC110520026
XM_021596992.2 mRNA downstream 285569 45539844 ~ 45548737 (-) False LOC110520026
XM_021597004.2 mRNA upstream 186020 46020970 ~ 46024407 (-) True LOC110520035
XM_021597006.2 mRNA upstream 196532 46031482 ~ 46034427 (-) True LOC110520036
XM_021597007.2 mRNA upstream 208990 46043940 ~ 46047859 (-) True LOC110520037
XM_036974284.1 mRNA upstream 243111 46078061 ~ 46110748 (-) False LOC110504150
XM_036974282.1 mRNA upstream 243111 46078061 ~ 46239226 (-) False LOC110504150
TU299385 other downstream 296764 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 730043 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 822057 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1802801 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3508528 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1764268 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2197097 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3660527 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3667466 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3728898 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile