RNA id: TCONS_00029352


Basic Information

Item Value
RNA id TCONS_00029352
length 663
RNA type processed_transcript
GC content 0.38
exon number 2
gene id XLOC_014875
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30428913 ~ 30447743 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttttaaaaattattgcttttgttttatttcacattaaaaacataataataaaataaagttttaatttttatttaaaaaaacactacaaaaagtatGAAACGATAAATGGTATTGACAAAAGTAGTAATATCgttaaaaccttaacgatacccATCACTAGTCATTAATGTCCTATTAAAGATGAGGAATGAAGATAACTAAGTTGAGTGGTTTAACATGTTCTTCATATTTCTTCATGTTGATGTACAGGATGAGCCCACAAATAACTTGGACATTGAGTCAATTGATGCGTTGTCAGAAGCCATCAATGAATATAAAGGAGCTGTGATAATTGTGAGCCATGATGCCAGGCTGATCACAGAGACCCAGTGCCAGCTGTGGGTGGTGGAGGACCAGTCAATCAACCAGATCGACGGAGACTTTGAAGACTACAAGAGAGAAGTGCTGGAGGCCCTTGGTGAGACCCTGGTCAACAAGCCTAAAGAGTGAAGCACGGCCGGTGTTTATTACAGGAGTGTCAAACTACATCACTGAAGGGCTTTTTGCTGCGTCTACATTGCTACTTCTCAATAGAACCAAAAAGTACCTGCATGCAAACATACAAACCCTACAGCTGCAGGACGAGTGAAAGCTGACGCCAGATCAGTATTTTCACATGCAG

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050517-31 Predicted to enable ATP binding activity. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1).

Ensembl:

ensembl_id ENSDART00000143319

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029342 lncRNA downstream 74977 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030291 lncRNA downstream 77196 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00030290 lncRNA downstream 113189 30312845 ~ 30316143 (-) True XLOC_014871
TCONS_00029790 lncRNA downstream 128480 30230745 ~ 30300852 (-) False XLOC_014870
TCONS_00030292 lncRNA upstream 38220 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00030293 lncRNA upstream 160569 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030294 lncRNA upstream 289262 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00029791 lncRNA upstream 399440 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00029371 lncRNA upstream 530973 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029348 mRNA downstream 7093 30409881 ~ 30422239 (-) False XLOC_014874
TCONS_00029350 mRNA downstream 7297 30410133 ~ 30422035 (-) True XLOC_014874
TCONS_00029349 mRNA downstream 8730 30410133 ~ 30420602 (-) False XLOC_014874
TCONS_00029347 mRNA downstream 12192 30408317 ~ 30417140 (-) False XLOC_014874
TCONS_00029346 mRNA downstream 25236 30401544 ~ 30404096 (-) True XLOC_014873
TCONS_00029354 mRNA upstream 10728 30442478 ~ 30447611 (-) True XLOC_014875
TCONS_00029356 mRNA upstream 43531 30475281 ~ 30510259 (-) False XLOC_014877
TCONS_00029355 mRNA upstream 43531 30475281 ~ 30510259 (-) False XLOC_014877
TCONS_00029358 mRNA upstream 43531 30475281 ~ 30510304 (-) False XLOC_014877
TCONS_00029357 mRNA upstream 43531 30475281 ~ 30510304 (-) False XLOC_014877
TCONS_00029343 other downstream 79134 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 556217 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 644120 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 1987372 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029305 other downstream 2823592 27589335 ~ 27605740 (-) True XLOC_014843
TCONS_00029367 other upstream 321059 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 568083 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 647576 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029381 other upstream 648428 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029389 other upstream 1151502 31583252 ~ 31584401 (-) True XLOC_014894

Expression Profile

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