RNA id: TU300498


Basic Information

Item Value
RNA id TU300498
length 1138
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G264326
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45936521 ~ 45938430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGACCAACGAAGatgaaaaataatacatttataaCAAAATGAATATTGCTATGTTACATCCCCAAAATACACATTCTCCAGAACAAAATTAATGTGCAAACTACTAAATCTGCATCAAAATAATCTAACATTTTACCAGTAACAtatcatgtgtttttttttaacacagaCCCAATGTATTTGCTCATAATAAATAACCCTAACTGACCGGTTCTTtgataaaatgcattttgatataTTCTATGCAGAAATTCGATTTTCATaataaaacacacagccaggcaaACAATGGACCTATTAGCAAACAATGGACCTATTAGCAAACAAGGATGCACTGTAAAAACACCCACAAATCTAGTTGTTTCAACAAATTATTATTCAGTAACTGGTTCCACAGACTTTTTTCTGTTTACTCAACTTTTCATTCCAAGTGTTACCTGAACAGAAAATGTATATATGGCCCAAACCTAAGCTCCAACTTGAGGAAACTTTGACAAAAATTCTGTCCTTTTAAAATCATGTGTTTGCTCAACTTGTCTcatatgttgattcaactagacATTACTTAGGCATCTTAACTAAAAGAAAAGTCTGTGCAACTGACAGTGATTTGAACGCACATATTTGAcacacatgattacattgtgcgTGTTTATTTAAAGGATGATTATATAtgcacctgggatttgaactcacaaactCTTGGTTGATGGCATTCCGATCCTCCTGCTACACCACCATGTCTTGGTGGATTGTCTCTTAACCTGACTATTCTCTCATCGTTGATTTGATGGACTTATTTAAGTGATTCTTGttttttctgtatagttgtctaatgtttgGCGGAGCATATTACTCTGTTTTTatgttactcctgaatcactatgacGAACATAATAGCTTTTCttgagtgtacttttaacagagctgagatttacaGTGAAGTGCAACGTGTAGCAGTACAGGTGAAATCAGTCGTTGACACAGACATGATAGTGTAGCAGGAAGATTAGCGTGCCAGGAAGATTAGCGTGCCGTAAACCAAGAGGTTCagaggacatgttgaatatgaATGACTTTATAAATGGACATGTGCAATGTCTGTCAAATATGTACGTTAAACACACTGTGTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300493 lncRNA downstream 3524 45933288 ~ 45933769 (-) True G264324
TU300492 lncRNA downstream 4017 45933046 ~ 45933276 (-) True G264323
TU300491 lncRNA downstream 4261 45932368 ~ 45933032 (-) True G264322
TU300453 lncRNA downstream 52829 45884216 ~ 45884464 (-) True G264287
TU299771 lncRNA downstream 92947 45844083 ~ 45844346 (-) True G263644
TU300500 lncRNA upstream 1579 45940009 ~ 45940213 (-) True G264328
TU300505 lncRNA upstream 7174 45945604 ~ 45945878 (-) True G264333
TU300506 lncRNA upstream 8164 45946594 ~ 45946959 (-) True G264334
TU300507 lncRNA upstream 9128 45947558 ~ 45947776 (-) True G264335
TU300511 lncRNA upstream 16832 45955262 ~ 45955927 (-) True G264339
XM_021597001.2 mRNA downstream 92249 45830930 ~ 45845044 (-) True LOC110520032
XM_036974264.1 mRNA downstream 349622 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_036974256.1 mRNA downstream 349768 45580103 ~ 45587525 (-) False si:ch1073-416j23.1
XM_021596995.2 mRNA downstream 349890 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
XM_036974236.1 mRNA downstream 370247 45539844 ~ 45567046 (-) True LOC110520026
XM_021597004.2 mRNA upstream 82540 46020970 ~ 46024407 (-) True LOC110520035
XM_021597006.2 mRNA upstream 93052 46031482 ~ 46034427 (-) True LOC110520036
XM_021597007.2 mRNA upstream 105510 46043940 ~ 46047859 (-) True LOC110520037
XM_036974284.1 mRNA upstream 139631 46078061 ~ 46110748 (-) False LOC110504150
XM_036974282.1 mRNA upstream 139631 46078061 ~ 46239226 (-) False LOC110504150
TU299385 other downstream 399751 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 833030 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 925044 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1905788 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3611515 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1660788 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2093617 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3557047 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3563986 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3625418 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile