RNA id: TU300505


Basic Information

Item Value
RNA id TU300505
length 275
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G264333
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45945604 ~ 45945878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacactccgagggccctcacctcctccctgtaggccgtctcgtcgttgttggtaatcaagcctaccactgttgtgtcgtccgcaaacttgatgattgagttggaggcgtgcgtggccacgcagtcgtgggtgaacagggagtacaggagagggctcagaacgcacccttgtggggccccagtgttgaggatcagcggggaggagatgttgttgcctaccctcaccacctgggggcggcccgtcaggaagtccagtacccagttgcacaggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300500 lncRNA downstream 5391 45940009 ~ 45940213 (-) True G264328
TU300497 lncRNA downstream 7174 45936521 ~ 45938430 (-) False G264326
TU300498 lncRNA downstream 7174 45937293 ~ 45938430 (-) True G264326
TU300493 lncRNA downstream 11835 45933288 ~ 45933769 (-) True G264324
TU300492 lncRNA downstream 12328 45933046 ~ 45933276 (-) True G264323
TU300506 lncRNA upstream 716 45946594 ~ 45946959 (-) True G264334
TU300507 lncRNA upstream 1680 45947558 ~ 45947776 (-) True G264335
TU300511 lncRNA upstream 9384 45955262 ~ 45955927 (-) True G264339
TU300512 lncRNA upstream 16371 45962249 ~ 45962486 (-) True G264340
TU300513 lncRNA upstream 18033 45963911 ~ 45964174 (-) True G264341
XM_021597001.2 mRNA downstream 100560 45830930 ~ 45845044 (-) True LOC110520032
XM_036974264.1 mRNA downstream 357933 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_036974256.1 mRNA downstream 358079 45580103 ~ 45587525 (-) False si:ch1073-416j23.1
XM_021596995.2 mRNA downstream 358201 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
XM_036974236.1 mRNA downstream 378558 45539844 ~ 45567046 (-) True LOC110520026
XM_021597004.2 mRNA upstream 75092 46020970 ~ 46024407 (-) True LOC110520035
XM_021597006.2 mRNA upstream 85604 46031482 ~ 46034427 (-) True LOC110520036
XM_021597007.2 mRNA upstream 98062 46043940 ~ 46047859 (-) True LOC110520037
XM_036974284.1 mRNA upstream 132183 46078061 ~ 46110748 (-) False LOC110504150
XM_036974282.1 mRNA upstream 132183 46078061 ~ 46239226 (-) False LOC110504150
TU299385 other downstream 408062 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 841341 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 933355 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1914099 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3619826 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1653340 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2086169 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3549599 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3556538 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3617970 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile