RNA id: TCONS_00029354


Basic Information

Item Value
RNA id TCONS_00029354
length 821
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_014875
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30428913 ~ 30447743 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGTGCTCGTGTTCATTGTCAGCTGTAAAACATCCCGCAGTCTCCTTTAACACATTGGCTTTTCATTCTTAGCAAAAGAAAAGGTTAAAAGAAAGATGCCTAAGAAGTCAAAAGAAAAGGCTGAGTGGGAGGGTGATGATGAACCACAAACAGtagaCAAACATGTCAAAAAAGGCAAGAAGGATAAGAAAGACAAGAAGAGTTTTTTTGAGGAGCTGGCATCAGAGAATAAACCAGAAAAAGAACAGCCACCAGTGAAAGAGGTGCAAGGAAAGCAGcctcagaagaagaagaaagacagGCGGAAAGGAAAACCAGGAgacgatgaagatgatgatgaagattcaGAGGTCATGCAGCGTCTCAAGAAACTGTCAGTCCAGGCTagtgatgaggaggaggaagaagaagTTGTTGTTCCAGCCAAAGGAGGAAAGAGAAACAAAGGTGGCAATATATTTGCTGCACTGAGCCAGGGGCAgagtgatgatgaagatgatgaagctggtggtgatgataatgatgatgatgatgacaaaccCAGAAGCAAGAAGAGCTCTAAGGAGGCCTCAGAGGACGAGCAAGATGAAGGTGCAGAGaaaaaagatgaaaatgaaaagaaaggaGGGAAAAAGGGCAAGAAAGCTGCTGCAGCTGCTAAACCATCTAAGGAGGAAGATGATATTGAAGAGAAAGAACAAGAGAAGTCCCAGAAAAAGGGCAAGAAGGAACCACCCAAGAAAGGGAAACCTGCTCGTCCTCCTCCgagtgatgatgatgaagaggaggaagaaaAGAGTGATGACAATGACATAATGAT

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050517-31 Predicted to enable ATP binding activity. Orthologous to human ABCF1 (ATP binding cassette subfamily F member 1).

Ensembl:

ensembl_id ENSDART00000073705

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029342 lncRNA downstream 88123 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030291 lncRNA downstream 90342 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00030290 lncRNA downstream 126335 30312845 ~ 30316143 (-) True XLOC_014871
TCONS_00030289 lncRNA downstream 141744 30271204 ~ 30300734 (-) False XLOC_014870
TCONS_00030292 lncRNA upstream 22359 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00030293 lncRNA upstream 144708 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030294 lncRNA upstream 273401 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00029791 lncRNA upstream 383579 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00029371 lncRNA upstream 515112 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029348 mRNA downstream 20239 30409881 ~ 30422239 (-) False XLOC_014874
TCONS_00029350 mRNA downstream 20443 30410133 ~ 30422035 (-) True XLOC_014874
TCONS_00029349 mRNA downstream 21876 30410133 ~ 30420602 (-) False XLOC_014874
TCONS_00029347 mRNA downstream 25338 30408317 ~ 30417140 (-) False XLOC_014874
TCONS_00029346 mRNA downstream 38382 30401544 ~ 30404096 (-) True XLOC_014873
TCONS_00029356 mRNA upstream 27670 30475281 ~ 30510259 (-) False XLOC_014877
TCONS_00029355 mRNA upstream 27670 30475281 ~ 30510259 (-) False XLOC_014877
TCONS_00029358 mRNA upstream 27670 30475281 ~ 30510304 (-) False XLOC_014877
TCONS_00029357 mRNA upstream 27670 30475281 ~ 30510304 (-) False XLOC_014877
TCONS_00029359 mRNA upstream 27670 30475281 ~ 30510930 (-) False XLOC_014877
TCONS_00029352 other downstream 10728 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029343 other downstream 92280 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 569363 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 657266 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 2000518 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029367 other upstream 305198 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 552222 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 631715 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029381 other upstream 632567 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029389 other upstream 1135641 31583252 ~ 31584401 (-) True XLOC_014894

Expression Profile

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