RNA id: TU300513


Basic Information

Item Value
RNA id TU300513
length 264
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G264341
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45963911 ~ 45964174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtaatccagcatcattgtcacaccctgatctgtttcacctgtctttgttattgtctccacccccctccaggtgtcgctcatcttccccattatcccctgtgtatttattcctgtgttctctgtttgagTGTTTCATGTGTCCAGAGTTAAACCCATGtttcacagccctttgtctcctgtttgtctgttgccagttcgttttgtttaaCAAGTGAAGCAGCATTTTTtggtctcagctcctgcttttccccagtctctcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300512 lncRNA downstream 1425 45962249 ~ 45962486 (-) True G264340
TU300511 lncRNA downstream 7984 45955262 ~ 45955927 (-) True G264339
TU300507 lncRNA downstream 16135 45947558 ~ 45947776 (-) True G264335
TU300506 lncRNA downstream 16952 45946594 ~ 45946959 (-) True G264334
TU300505 lncRNA downstream 18033 45945604 ~ 45945878 (-) True G264333
TU300516 lncRNA upstream 2776 45966950 ~ 45988003 (-) True G264343
TU300527 lncRNA upstream 24551 45988725 ~ 45989107 (-) True G264354
TU300529 lncRNA upstream 26153 45990327 ~ 45990570 (-) True G264356
TU300542 lncRNA upstream 31443 45995617 ~ 45995881 (-) True G264367
TU300547 lncRNA upstream 38765 46002939 ~ 46003708 (-) True G264372
XM_021597001.2 mRNA downstream 118867 45830930 ~ 45845044 (-) True LOC110520032
XM_036974264.1 mRNA downstream 376240 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_036974256.1 mRNA downstream 376386 45580103 ~ 45587525 (-) False si:ch1073-416j23.1
XM_021596995.2 mRNA downstream 376508 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
XM_036974236.1 mRNA downstream 396865 45539844 ~ 45567046 (-) True LOC110520026
XM_021597004.2 mRNA upstream 56796 46020970 ~ 46024407 (-) True LOC110520035
XM_021597006.2 mRNA upstream 67308 46031482 ~ 46034427 (-) True LOC110520036
XM_021597007.2 mRNA upstream 79766 46043940 ~ 46047859 (-) True LOC110520037
XM_036974284.1 mRNA upstream 113887 46078061 ~ 46110748 (-) False LOC110504150
XM_036974282.1 mRNA upstream 113887 46078061 ~ 46239226 (-) False LOC110504150
TU299385 other downstream 426369 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 859648 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 951662 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1932406 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3638133 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1635044 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2067873 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3531303 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3538242 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3599674 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile