RNA id: TU300547


Basic Information

Item Value
RNA id TU300547
length 770
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G264372
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46002939 ~ 46003708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTACTAATCTCTTTGTCCAATCATACTGGACATCCTCTAGGAACCCATATAGTAGATCCTATTAGCTAGAACACTCTCCACTGTACAAGACTGACCAGACTTGGCAAAAATACACTGGGTTACTTAACCAGAGCTTAATGTTCTTTTCCGAGAGCGTTACAATGGAAACTGGCTGCAAACATAAACCCCAATGTCTGATGACATTCATAGCATCATCTACCTTCATCCTGGTCTCACAACTTGTAAGTCTACTTCATAGGCAAGGTAGTCGAGAGGACAATTTCATTATTTTACTAGCTCGCAGGAGCTGTCACTGGTTTGTAAACTGTGAACTGGTTCTAAGTATGTTAACATAACCTCCTACAAGAAGGATCTGTCTGAGAAATATGGTTGTTCATGGCATGGGGAAATCTGAGACAATGGATTAGTTCCAAacggttccctattccctatttagtgcactactgttgaccatgatTTATTTTATGGGCCTTtgtgaaaagtagtgcagtataaaGGGAAtcgctgccatttgggacagaacctGTTCGTTCCAACAGCCTGGCCAGTCTTCTTATTCTTTGTTCAGTGACTTGGCTCATGGACCTCTTTGAGGGGAACTGAGAGAAGCTCTGATCAATGAGATCATACATGCTAGCCAGTAGCCACACCATGTCAATAGTGAAGTGATGAAGACACACAGAATGGAAGTGTTCTCACCTAACAAGACTTCAATAAACCTTGATGATGACGAATGATCAAATCGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300542 lncRNA downstream 7058 45995617 ~ 45995881 (-) True G264367
TU300529 lncRNA downstream 12369 45990327 ~ 45990570 (-) True G264356
TU300527 lncRNA downstream 13832 45988725 ~ 45989107 (-) True G264354
TU300516 lncRNA downstream 14936 45966950 ~ 45988003 (-) True G264343
TU300513 lncRNA downstream 38765 45963911 ~ 45964174 (-) True G264341
TU300549 lncRNA upstream 2043 46005751 ~ 46006032 (-) True G264374
TU300546 lncRNA upstream 4620 46008328 ~ 46010622 (-) True G264371
TU300536 lncRNA upstream 44416 46048124 ~ 46055954 (-) False G264361
TU300534 lncRNA upstream 51454 46055162 ~ 46055954 (-) True G264361
TU300567 lncRNA upstream 55770 46059478 ~ 46059722 (-) True G264390
XM_021597001.2 mRNA downstream 157895 45830930 ~ 45845044 (-) True LOC110520032
XM_036974264.1 mRNA downstream 415268 45580103 ~ 45587671 (-) True si:ch1073-416j23.1
XM_036974256.1 mRNA downstream 415414 45580103 ~ 45587525 (-) False si:ch1073-416j23.1
XM_021596995.2 mRNA downstream 415536 45580103 ~ 45587403 (-) False si:ch1073-416j23.1
XM_036974236.1 mRNA downstream 435893 45539844 ~ 45567046 (-) True LOC110520026
XM_021597004.2 mRNA upstream 17262 46020970 ~ 46024407 (-) True LOC110520035
XM_021597006.2 mRNA upstream 27774 46031482 ~ 46034427 (-) True LOC110520036
XM_021597007.2 mRNA upstream 40232 46043940 ~ 46047859 (-) True LOC110520037
XM_036974284.1 mRNA upstream 74353 46078061 ~ 46110748 (-) False LOC110504150
XM_036974282.1 mRNA upstream 74353 46078061 ~ 46239226 (-) False LOC110504150
TU299385 other downstream 465397 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 898676 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 990690 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 1971434 43989524 ~ 44031505 (-) True G261580
TU295450 other downstream 3677161 42322739 ~ 42325778 (-) True G259576
TU302286 other upstream 1595510 47599218 ~ 47599815 (-) True G265988
TU302595 other upstream 2028339 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 3491769 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 3498708 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 3560140 49563848 ~ 49565989 (-) False LOC110520112

Expression Profile