RNA id: TCONS_00030293


Basic Information

Item Value
RNA id TCONS_00030293
length 831
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id XLOC_014879
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30592319 ~ 30623732 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agctggaaagcCGTTCATAAGCAGCTGATGTGCAGGGTGGAGATGGGATGACCAGATGGAAACAGATGACCAGAGGACATATCAGAGGACACAGGAAACACAGAAATTCGGGTACAGGGATCGATGACAACCAGAGGAGGAACCAGAAGAAACCACACTAAGAAGGAGAGATGCAGACACTGGAGTTCACAGGAAGCGAGAGAGGCGTCTGTGCCAAGCTTAATGAAGCCACATAGCGAGTATTCTGTTGCTATGACAACCTTCAGTCACTGAGGCCAAAGTGTTTTGTGGAGCCatggatggagagacagacaCTCCATCACTCAGAGGACAGACACAGTCTATCATCTCCAAgcatgataatgatgatgatgtaaccACCATGGGCTGAATATCACTGTCCTACAGTGTTCACGCAGAGCTGGTTCTACATATAAGCACACATACATAAGCACAGTAAATCTGTAGTGGAGTTGCTGAAGCGGAAACATAGGTGGGGACTTTATGCTTCAACACCCCCTTGTGTTTCTATCAAATCCACTTGGAGTGATGCCAGTAGTAGGATTTGACCCTTAAGAATCAGTAATATCTCAGTAAAGGTGGAGGTGACGTGTCATTGTTTTCTTTATCATGGTGTCTTTTTTAAATGCTACAGTATATAACAGagtaaatacaaatgtatatcACAAGCCCCCTCGCACACCAAAATGAAGAAAGCAtggaaataatgaaatggccagcACAGAGCCCTGATTGCaaatttgaatataaaacaatgaatagCAAAGCCAATATCCGGATGTATTCCTGATTGCAAATTTTGGGAAAATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030292 lncRNA downstream 121818 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029342 lncRNA downstream 237964 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030291 lncRNA downstream 240183 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00030290 lncRNA downstream 276176 30312845 ~ 30316143 (-) True XLOC_014871
TCONS_00030289 lncRNA downstream 291585 30271204 ~ 30300734 (-) False XLOC_014870
TCONS_00030294 lncRNA upstream 97280 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00029791 lncRNA upstream 207458 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00029371 lncRNA upstream 338991 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029413 lncRNA upstream 2001024 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029429 lncRNA upstream 2634840 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029362 mRNA downstream 27197 30517311 ~ 30565122 (-) False XLOC_014878
TCONS_00029361 mRNA downstream 29671 30517311 ~ 30562648 (-) False XLOC_014878
TCONS_00029363 mRNA downstream 67367 30522281 ~ 30524952 (-) True XLOC_014878
TCONS_00029359 mRNA downstream 81389 30475281 ~ 30510930 (-) False XLOC_014877
TCONS_00029360 mRNA downstream 81389 30506050 ~ 30510930 (-) True XLOC_014877
TCONS_00029365 mRNA upstream 99035 30722767 ~ 30800004 (-) False XLOC_014881
TCONS_00029364 mRNA upstream 99035 30722767 ~ 30800004 (-) False XLOC_014881
TCONS_00029366 mRNA upstream 109589 30733321 ~ 30800082 (-) False XLOC_014881
TCONS_00029368 mRNA upstream 181781 30805513 ~ 30811161 (-) False XLOC_014882
TCONS_00029369 mRNA upstream 183261 30806993 ~ 30810328 (-) True XLOC_014882
TCONS_00029352 other downstream 160569 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029343 other downstream 242121 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 719204 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 807107 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 2150359 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029367 other upstream 129077 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029373 other upstream 376101 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 455594 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029381 other upstream 456446 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029389 other upstream 959520 31583252 ~ 31584401 (-) True XLOC_014894

Expression Profile

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