RNA id: TCONS_00029365


Basic Information

Item Value
RNA id TCONS_00029365
length 2233
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_014881
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30722767 ~ 30800082 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGAGAGCTTGCTGTCATGGCGGCCGCCACGCGTGTACTCCAGAAAGGTATCAAGCCCTCTTTAGTGGTGATTTTAGGAGCAACTGGAACTGGCAAATCTAAACTGGCTATCGAGATCGGGAAAAGGCTTAATGGGGAGATTATAAGCGCTGATTCCATGCAGGTTTACAAAGGGCTGGACATCATCACCAACAAGGTTACAGAGGAAGAGCAAGCCCAATGTCACCATCATATGATCAGCTTTGTGGATCCATTGGTTAGTGGCTACACAGTGGTGGACTTCAGGAACAAAGCTCTTTCTCTCATAGAAGACATGCATCATCGGAAGAAGCTCCCTGTCATTGTTGGAGGCACAAACTACTACATTGAGTCCATTTTATGGAAAGTGCTCATCGACACTGGGCAAGGGAGTGACACAGAGCCAGAAAAAGGTGGAGGTGCTGATTCAAGAGCGGGGCTAGAAAAACTGGGTGGTCCTGAACTTCACAGACGGTTAAAGGAGGTGGATCCTGACATGGCCGCCATATTGCACCCTCATGATTCACGAAAGATTGCAAGGAGTCTGCAGGTGTATATGGACACCGGAGTTCCACATAGTCGACTTTTGGAGGAGCAGCGAGGACAGGATGGAGGAGATTGTCTTGGGGGTCCCTTGCGGTTCCAGGATCCTTGCATCTTCTGGCTGAACGGCAAAACAAATGTTCTGGATGAGAGATTGGACAAGCGTGTGGATCAGATGTTGTCACTTGGGCTGATTGATGAGCTTAAAGATTTTCACCTGCGCTTCAATGAGAAGATGATCAAAGAGAGCAGtcagaactaTCAACACGGCATATTCCAGTCTATTGGTTTTAAAGAGTTTCACGAGTACCTTACAACGAGTGAGAACATCAGTCAGGAAGAACGTGATAAACTGATGAATAAGGGGATCGAGTCTCTCAAGCAGGTGACCCGCCGCTACGCCCGGAAACAGAATAAGTGGGTCCGTAACCGATTCCTCAAGAGACCTGCTAGCAATGTGCCACCTGTTTATGGTCTGGATGTGACTGATGTGACCAATTGGGAGACTACTGTACTTACTCCTGCTCTAGAGATCCTGGACTGCCTCCAAAAGGGAGAGCAACCATCTGCACAGCCAATTAAAGCAGAGGGGGTGGAGTCTCGCAATAAGCGGAGTCATCACATGTGCGATCTGTGCGAAAAGGTAATCATTGGAGACTTGGAATGGACAGCTCACCAGAAGTCCAAAAACCATCTTTATCAAGTCCGTAAGAAGAGGAAATCAGAGCAGGCCACAGATCTGGATACAAAACATGCCAAACATCAAAATGACTGTGACAAGCAGGTACCTGCACTATAACATCCCTCGCTGCCTCTACTGGGGTGTTTTGGGGTCAAGCTTGGAGATGGACCAAAGGAATAAAAGTACTCTTAATGTATTTTTGAGATCAATATGACAAGGTACTTTGAGATTGATTGGTTTACAGTGTGCAGCAGAGATATCTCCAGTGTCCCTGTGGAGTAGCAAAACTTTACTTCAGGCTCTGTGATGCTTGGACCCCTGGATTTGGTGGTTTTCCCCATCTGCCACAGGCCTGTGGTTACAGTTAATGTCTGGATTTGGATTCTTGTGTTGGACAGATGTCTTCCCTGCTGCTGTTTTGTCTGAGCAGTGGTCTTTTTTAACCACATCTAGCCACCTCTGTTGCCCTCTTAAACCACACTGTGGTGAGCTGTTCTAACCTTTTTGGCTGCTCTAACTGAACTCCAAATACTTCACAGATGATTTTGGATTACTGGATCACATTTGTTTTCCTGCTGATCGAGAATGGAGGttatttattcaatattaaaTCTTATGCAGACTTTTTTTTGCAGGTCTTGCATTTAAATTCAATCATCTGATCCATTAGGATCAGCGCATATCTTTGACTTTAAGCAGATGTGGACATTCGTCTTCAGGATTTCCAGTGCCTTTGCCCTTTCTCTTGCAACATCAATCAAACAACACACATTCATGTGAAACGCAATTATATTGTGgaaaagagcagcatgaacattcttGCAAATAACGTTTGGACGATCATCAGTGCGAATAGGTAATTTTTCAGTTTAAGACTCTGCATTTGCTTCATGAGTTTAAGTGttgatatttcattatttttacagAGTGATATGTCTATTACTGCATACATTATGCAAATGAAATTaaagtgctttttattttttaaa

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0052381 tRNA dimethylallyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko00908 Zeatin biosynthesis
ko01006 Prenyltransferases
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-060503-297 Predicted to enable tRNA dimethylallyltransferase activity. Predicted to be involved in tRNA modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 35. Orthologous to human TRIT1 (tRNA isopentenyltransferase 1).

Ensembl:

ensembl_id ENSDART00000128560

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030294 lncRNA downstream 263 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 99035 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030292 lncRNA downstream 252266 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029342 lncRNA downstream 368412 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030291 lncRNA downstream 370631 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00029791 lncRNA upstream 31186 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00029371 lncRNA upstream 162719 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029413 lncRNA upstream 1824752 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029429 lncRNA upstream 2458568 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 2470573 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00029362 mRNA downstream 157645 30517311 ~ 30565122 (-) False XLOC_014878
TCONS_00029361 mRNA downstream 160119 30517311 ~ 30562648 (-) False XLOC_014878
TCONS_00029363 mRNA downstream 197815 30522281 ~ 30524952 (-) True XLOC_014878
TCONS_00029359 mRNA downstream 211837 30475281 ~ 30510930 (-) False XLOC_014877
TCONS_00029360 mRNA downstream 211837 30506050 ~ 30510930 (-) True XLOC_014877
TCONS_00029368 mRNA upstream 5509 30805513 ~ 30811161 (-) False XLOC_014882
TCONS_00029369 mRNA upstream 6989 30806993 ~ 30810328 (-) True XLOC_014882
TCONS_00029370 mRNA upstream 97251 30897255 ~ 30904590 (-) True XLOC_014884
TCONS_00029372 mRNA upstream 199829 30999833 ~ 31007417 (-) True XLOC_014886
TCONS_00029374 mRNA upstream 207897 31007901 ~ 31042709 (-) False XLOC_014887
TCONS_00029352 other downstream 291017 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029343 other downstream 372569 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 849652 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 937555 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029320 other downstream 2280807 28441841 ~ 28441960 (-) True XLOC_014853
TCONS_00029373 other upstream 199829 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 279322 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029381 other upstream 280174 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029389 other upstream 783248 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029399 other upstream 1278947 32078951 ~ 32150111 (-) True XLOC_014900