RNA id: TU302364



Basic Information


Item Value
RNA id TU302364
length 312
lncRNA type intronic
GC content 0.51
exon number 1
gene id G266045
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47669379 ~ 47669690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAcagtagtgcggtctgcacaacgcaccaccgggggaaaactacctgccctccagaacacctacagcacccgatgtcacaggaaggccaaaaagatcatcaaggacaacaaccacccgagccactgcctgttcccccCGCTATCATccggaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaacccATCAGaccgttaaacagccatcactaacatagagaggctgctgccaaaatacagactcaaatctctggccactttaataaatggtcttaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302317 lncRNA downstream 27717 47641403 ~ 47641662 (-) True G266019
TU302314 lncRNA downstream 31694 47637476 ~ 47637685 (-) True G266016
TU302293 lncRNA downstream 60715 47608455 ~ 47608664 (-) True G265995
TU302290 lncRNA downstream 64777 47604274 ~ 47604602 (-) True G265992
TU302289 lncRNA downstream 65326 47603844 ~ 47604053 (-) True G265991
TU302365 lncRNA upstream 2245 47671935 ~ 47672253 (-) True G266046
TU302368 lncRNA upstream 6187 47675877 ~ 47676460 (-) True G266049
TU302374 lncRNA upstream 12477 47682167 ~ 47688530 (-) True G266055
TU302380 lncRNA upstream 19946 47689636 ~ 47689849 (-) True G266061
TU302386 lncRNA upstream 27627 47697317 ~ 47697605 (-) True G266067
XM_021597034.2 mRNA downstream 440716 47188482 ~ 47228663 (-) True LOC110520052
XM_021597030.2 mRNA downstream 440718 47188482 ~ 47228661 (-) False LOC110520052
XM_021597031.2 mRNA downstream 443633 47188482 ~ 47225746 (-) False LOC110520052
XM_036974311.1 mRNA downstream 491731 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 496726 47148344 ~ 47172653 (-) False LOC110520051
XM_021597053.2 mRNA upstream 55584 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 55584 47725274 ~ 47747612 (-) False LOC110520059
XM_021597052.2 mRNA upstream 55584 47725274 ~ 47747614 (-) False LOC110520059
XM_021597050.2 mRNA upstream 55584 47725274 ~ 47747615 (-) False LOC110520059
XM_036974336.1 mRNA upstream 79939 47749629 ~ 47789697 (-) False LOC110520061
TU302286 other downstream 69564 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2131837 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2565116 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2657130 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3637874 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 362357 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1825787 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1832726 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1894158 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1894158 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile