RNA id: TU302380


Basic Information

Item Value
RNA id TU302380
length 214
lncRNA type antisense_over
GC content 0.57
exon number 1
gene id G266061
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47689636 ~ 47689849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTTGCAacatgtgccatttgggattcaaccagtgtgttttgaCTGACCTGTGTGTGTCCCATGCTGGAGGCAGCGATCAGAGCCTGCTGGAGGGTCTTGTTCTTCAGACTGCAGTTCTGCTGCTGGCCCTCGGGGGTCCACTCCAGCTCCAAGAGGTACTGGATGATGCCAGGGTGGCCCCTCAGAGCAGCATGGACCAGAGCACACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302374 lncRNA downstream 1106 47682167 ~ 47688530 (-) True G266055
TU302368 lncRNA downstream 13176 47675877 ~ 47676460 (-) True G266049
TU302365 lncRNA downstream 17383 47671935 ~ 47672253 (-) True G266046
TU302364 lncRNA downstream 19946 47669379 ~ 47669690 (-) True G266045
TU302317 lncRNA downstream 47974 47641403 ~ 47641662 (-) True G266019
TU302386 lncRNA upstream 7468 47697317 ~ 47697605 (-) True G266067
TU302389 lncRNA upstream 9228 47699077 ~ 47702108 (-) True G266069
TU302392 lncRNA upstream 14160 47704009 ~ 47704291 (-) True G266072
TU302399 lncRNA upstream 22368 47712217 ~ 47712425 (-) True G266079
TU302400 lncRNA upstream 22717 47712566 ~ 47712873 (-) True G266080
XM_021597034.2 mRNA downstream 460973 47188482 ~ 47228663 (-) True LOC110520052
XM_021597030.2 mRNA downstream 460975 47188482 ~ 47228661 (-) False LOC110520052
XM_021597031.2 mRNA downstream 463890 47188482 ~ 47225746 (-) False LOC110520052
XM_036974311.1 mRNA downstream 511988 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 516983 47148344 ~ 47172653 (-) False LOC110520051
XM_021597053.2 mRNA upstream 35425 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 35425 47725274 ~ 47747612 (-) False LOC110520059
XM_021597052.2 mRNA upstream 35425 47725274 ~ 47747614 (-) False LOC110520059
XM_021597050.2 mRNA upstream 35425 47725274 ~ 47747615 (-) False LOC110520059
XM_036974336.1 mRNA upstream 59780 47749629 ~ 47789697 (-) False LOC110520061
TU302286 other downstream 89821 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2152094 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2585373 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2677387 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3658131 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 342198 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1805628 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1812567 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1873999 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1873999 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile