RNA id: TU302399


Basic Information

Item Value
RNA id TU302399
length 209
lncRNA type intronic
GC content 0.36
exon number 1
gene id G266079
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47712217 ~ 47712425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtcttttatactgataacaagttcaaccAGGtggcattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccatcatttgcaaataaattcataaaaaatcctacaatgtgattttctggattttttttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302392 lncRNA downstream 7926 47704009 ~ 47704291 (-) True G266072
TU302389 lncRNA downstream 10109 47699077 ~ 47702108 (-) True G266069
TU302386 lncRNA downstream 14612 47697317 ~ 47697605 (-) True G266067
TU302380 lncRNA downstream 22368 47689636 ~ 47689849 (-) True G266061
TU302374 lncRNA downstream 23687 47682167 ~ 47688530 (-) True G266055
TU302400 lncRNA upstream 141 47712566 ~ 47712873 (-) True G266080
TU302401 lncRNA upstream 558 47712983 ~ 47713327 (-) True G266081
TU302404 lncRNA upstream 3944 47716369 ~ 47716611 (-) True G266084
TU302405 lncRNA upstream 4845 47717270 ~ 47717485 (-) True G266085
TU302407 lncRNA upstream 6673 47719098 ~ 47719374 (-) True G266087
XM_021597034.2 mRNA downstream 483554 47188482 ~ 47228663 (-) True LOC110520052
XM_021597030.2 mRNA downstream 483556 47188482 ~ 47228661 (-) False LOC110520052
XM_021597031.2 mRNA downstream 486471 47188482 ~ 47225746 (-) False LOC110520052
XM_036974311.1 mRNA downstream 534569 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 539564 47148344 ~ 47172653 (-) False LOC110520051
XM_021597053.2 mRNA upstream 12849 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 12849 47725274 ~ 47747612 (-) False LOC110520059
XM_021597052.2 mRNA upstream 12849 47725274 ~ 47747614 (-) False LOC110520059
XM_021597050.2 mRNA upstream 12849 47725274 ~ 47747615 (-) False LOC110520059
XM_036974336.1 mRNA upstream 37204 47749629 ~ 47789697 (-) False LOC110520061
TU302286 other downstream 112402 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2174675 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2607954 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2699968 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3680712 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 319622 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1783052 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1789991 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1851423 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1851423 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile