RNA id: TU302401


Basic Information

Item Value
RNA id TU302401
length 345
lncRNA type intronic
GC content 0.39
exon number 1
gene id G266081
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47712983 ~ 47713327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatattccctacatagtgcattacttttgagaagaaccctataggacctggtcaagtaggatttttaatgaatttatttgcaaattatggtggaaaataattatttggtcaataacaaaagtttatctcaatgctttgttatataccctttgttggcaatgacagaggtcaaacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgttttggggctgttgctgggcaacaaggactttcaactccctccaaagattttctatggggttgagatctggagactggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302400 lncRNA downstream 110 47712566 ~ 47712873 (-) True G266080
TU302399 lncRNA downstream 558 47712217 ~ 47712425 (-) True G266079
TU302392 lncRNA downstream 8692 47704009 ~ 47704291 (-) True G266072
TU302389 lncRNA downstream 10875 47699077 ~ 47702108 (-) True G266069
TU302386 lncRNA downstream 15378 47697317 ~ 47697605 (-) True G266067
TU302404 lncRNA upstream 3042 47716369 ~ 47716611 (-) True G266084
TU302405 lncRNA upstream 3943 47717270 ~ 47717485 (-) True G266085
TU302407 lncRNA upstream 5771 47719098 ~ 47719374 (-) True G266087
TU302416 lncRNA upstream 6153 47719480 ~ 47719811 (-) True G266089
TU302417 lncRNA upstream 7579 47720906 ~ 47721133 (-) True G266090
XM_021597034.2 mRNA downstream 484320 47188482 ~ 47228663 (-) True LOC110520052
XM_021597030.2 mRNA downstream 484322 47188482 ~ 47228661 (-) False LOC110520052
XM_021597031.2 mRNA downstream 487237 47188482 ~ 47225746 (-) False LOC110520052
XM_036974311.1 mRNA downstream 535335 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 540330 47148344 ~ 47172653 (-) False LOC110520051
XM_021597053.2 mRNA upstream 11947 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 11947 47725274 ~ 47747612 (-) False LOC110520059
XM_021597052.2 mRNA upstream 11947 47725274 ~ 47747614 (-) False LOC110520059
XM_021597050.2 mRNA upstream 11947 47725274 ~ 47747615 (-) False LOC110520059
XM_036974336.1 mRNA upstream 36302 47749629 ~ 47789697 (-) False LOC110520061
TU302286 other downstream 113168 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2175441 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2608720 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2700734 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3681478 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 318720 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1782150 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1789089 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1850521 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1850521 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile