RNA id: TU302404


Basic Information

Item Value
RNA id TU302404
length 243
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G266084
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47716369 ~ 47716611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGTGTCCCTGTCTGACAGCACAGAAGAGAGGTGAGACCCCCCTGCGGTTGATCTGCTGCACCATAGCCCCCTGCTCCAGCAGGAAGCCACACACGTCCATCTTCCCCCGGCCCGCCGACACCGTCAGAGCTGATGAGACCAGAAGAGAAGAGATTGGTCAGGACTGGGGTCAGCAagggtgagaccacacacacacacggcaggctATGGTCTGGCTCGCGTGAGACAAAGCTTGCTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302401 lncRNA downstream 3042 47712983 ~ 47713327 (-) True G266081
TU302400 lncRNA downstream 3496 47712566 ~ 47712873 (-) True G266080
TU302399 lncRNA downstream 3944 47712217 ~ 47712425 (-) True G266079
TU302392 lncRNA downstream 12078 47704009 ~ 47704291 (-) True G266072
TU302389 lncRNA downstream 14261 47699077 ~ 47702108 (-) True G266069
TU302405 lncRNA upstream 659 47717270 ~ 47717485 (-) True G266085
TU302407 lncRNA upstream 2487 47719098 ~ 47719374 (-) True G266087
TU302416 lncRNA upstream 2869 47719480 ~ 47719811 (-) True G266089
TU302417 lncRNA upstream 4295 47720906 ~ 47721133 (-) True G266090
TU302432 lncRNA upstream 30972 47747583 ~ 47748055 (-) True LOC110520059
XM_021597034.2 mRNA downstream 487706 47188482 ~ 47228663 (-) True LOC110520052
XM_021597030.2 mRNA downstream 487708 47188482 ~ 47228661 (-) False LOC110520052
XM_021597031.2 mRNA downstream 490623 47188482 ~ 47225746 (-) False LOC110520052
XM_036974311.1 mRNA downstream 538721 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 543716 47148344 ~ 47172653 (-) False LOC110520051
XM_021597053.2 mRNA upstream 8663 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 8663 47725274 ~ 47747612 (-) False LOC110520059
XM_021597052.2 mRNA upstream 8663 47725274 ~ 47747614 (-) False LOC110520059
XM_021597050.2 mRNA upstream 8663 47725274 ~ 47747615 (-) False LOC110520059
XM_036974336.1 mRNA upstream 33018 47749629 ~ 47789697 (-) False LOC110520061
TU302286 other downstream 116554 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2178827 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2612106 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2704120 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3684864 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 315436 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1778866 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1785805 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1847237 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1847237 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile