RNA id: TU302416


Basic Information

Item Value
RNA id TU302416
length 332
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G266089
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47719480 ~ 47719811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaattATAATTTTAACAGTGTAATGTTGACTTGATCTCTTTTCCATACCTTGTAAAGCAGGTTGCCCTCCTCCATAAGCTTCTGCAGGAGAATGATGAGGATGTCAGGCTTGGACGTGGCCATAGCCCAGGCTGCATTCCCTGTTGGTCCACACAGACATAGAGAAAGTAGAGTTACACCACTGCCGCTGCCCGACCCACAGACTCTATTCACTAGGAAATTGGTAACAAGGTAAAGTTACCTAAAGATTGTACCTGATCGATCATAAGGCGACGTTCTGTACCCTTAGGGTTACATTGAAGGCAgttaagaagaagaaaaaaaggatGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302407 lncRNA downstream 106 47719098 ~ 47719374 (-) True G266087
TU302405 lncRNA downstream 1995 47717270 ~ 47717485 (-) True G266085
TU302404 lncRNA downstream 2869 47716369 ~ 47716611 (-) True G266084
TU302401 lncRNA downstream 6153 47712983 ~ 47713327 (-) True G266081
TU302400 lncRNA downstream 6607 47712566 ~ 47712873 (-) True G266080
TU302417 lncRNA upstream 1095 47720906 ~ 47721133 (-) True G266090
TU302432 lncRNA upstream 27772 47747583 ~ 47748055 (-) True LOC110520059
TU302355 lncRNA upstream 29438 47749249 ~ 47805960 (-) True LOC110520061
TU302499 lncRNA upstream 170587 47890398 ~ 47891579 (-) True G266169
TU302512 lncRNA upstream 201058 47920869 ~ 47921144 (-) True G266182
XM_021597034.2 mRNA downstream 490817 47188482 ~ 47228663 (-) True LOC110520052
XM_021597030.2 mRNA downstream 490819 47188482 ~ 47228661 (-) False LOC110520052
XM_021597031.2 mRNA downstream 493734 47188482 ~ 47225746 (-) False LOC110520052
XM_036974311.1 mRNA downstream 541832 47148344 ~ 47177648 (-) False LOC110520051
XM_036974312.1 mRNA downstream 546827 47148344 ~ 47172653 (-) False LOC110520051
XM_021597053.2 mRNA upstream 5463 47725274 ~ 47747611 (-) False LOC110520059
XM_021597051.2 mRNA upstream 5463 47725274 ~ 47747612 (-) False LOC110520059
XM_021597052.2 mRNA upstream 5463 47725274 ~ 47747614 (-) False LOC110520059
XM_021597050.2 mRNA upstream 5463 47725274 ~ 47747615 (-) False LOC110520059
XM_036974336.1 mRNA upstream 29818 47749629 ~ 47789697 (-) False LOC110520061
TU302286 other downstream 119665 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2181938 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 2615217 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 2707231 45010172 ~ 45012249 (-) True G262993
TU297567 other downstream 3687975 43989524 ~ 44031505 (-) True G261580
TU302595 other upstream 312236 48032047 ~ 48033302 (-) True LOC110505248
TU304852 other upstream 1775666 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1782605 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1844037 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1844037 49563848 ~ 49567474 (-) True LOC110520112

Expression Profile