RNA id: TU302770


Basic Information

Item Value
RNA id TU302770
length 272
lncRNA type intronic
GC content 0.35
exon number 1
gene id G266425
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48157514 ~ 48157785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGTAGGTTGATACATTGTTATTTTTTCATTCATAAAGAAAGCTCTTTTGCAAATGTCAGACTGTACCTAACATCATTACTAAACTTTAGACATTTGAGTTACCACAcccggtctcagggatggctaactctggaaattcctttgttctctaggTCTCTATCTTGTAGTTTTTTTgcaccttatttgtggaacaatcttcaaaatgttcttaaaTGTAATGTTTTGGTGCCTCTATGCCAATTTACAAAGCTGATTGAAGAtctttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302761 lncRNA downstream 13785 48143522 ~ 48143729 (-) True G266416
TU302706 lncRNA downstream 78505 48077799 ~ 48079009 (-) True G266362
TU302704 lncRNA downstream 80628 48076580 ~ 48076886 (-) True G266360
TU302703 lncRNA downstream 81939 48074066 ~ 48075575 (-) True G266359
TU302631 lncRNA downstream 91327 48065677 ~ 48066187 (-) True LOC118958229
TU302773 lncRNA upstream 3994 48161779 ~ 48161997 (-) True G266428
TU302705 lncRNA upstream 11215 48169000 ~ 48170006 (-) True LOC110520070
TU302863 lncRNA upstream 71737 48229522 ~ 48229761 (-) True G266518
TU302865 lncRNA upstream 73638 48231423 ~ 48231633 (-) True G266520
TU302893 lncRNA upstream 75379 48233164 ~ 48233372 (-) True G266547
XM_036974346.1 mRNA downstream 59825 48079101 ~ 48097689 (-) True LOC118958240
XR_005047293.1 mRNA downstream 91011 48065493 ~ 48066503 (-) False LOC118958229
LOC110504154 mRNA downstream 97784 48045708 ~ 48059730 (-) True LOC110504154
XM_036974344.1 mRNA downstream 111567 48033749 ~ 48045947 (-) True fap
XM_036974345.1 mRNA downstream 112059 48033749 ~ 48045455 (-) False fap
XM_021597082.2 mRNA upstream 76035 48233820 ~ 48269471 (-) False LOC110520071
XM_021597083.2 mRNA upstream 76035 48233820 ~ 48269471 (-) False LOC110520071
XM_021597093.2 mRNA upstream 195624 48353409 ~ 48375756 (-) False LOC110520072
XM_021597095.2 mRNA upstream 195624 48353409 ~ 48378813 (-) False LOC110520072
XM_021597094.2 mRNA upstream 195624 48353409 ~ 48380073 (-) False LOC110520072
TU302595 other downstream 124212 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 557699 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2619972 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3053251 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3145265 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 1337692 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1344631 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1406063 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1406063 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1709432 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile