RNA id: TCONS_00029369


Basic Information

Item Value
RNA id TCONS_00029369
length 1220
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_014882
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 30805513 ~ 30811161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATGCCAGGAATCAGTGCGAGCGCGTCGCGAATTAAGAAGTGGGAGATGGAGGAATACGACCAATATCAGCACTATTTCTACGACGACCACAACTTGGATGAGGACTTTTTCAAATCGACCGCACCGAGCGAGGACATTTGGAAGAAATTCGAGCTCGTGCCAACCCCGCCCATGTCGCCTGTCAGGATACTGGAAGGTAGCGGTCCATCTCCGGGGGACAGGCTGGAGTGGGTGTCCCAGTTTTTGGGACAGGACGACGAGCAGGAGGGGCTGTGCAAACTCAATGCGGAGGAGACTCTGGAGAACCTGAGCTCCATCATAATTCAGGACTGCATGTGGAGCAGTTTCTCCGCAAGTCAGCAGCTGGAGAAAGTTGTCAGCGAGCGGCTGTCCTGCTCGGCGCAGTCCAAACTCTCCGGCAAGGCGCAGTGCGTCCCTGCGGACGTGCCTGCTCTCAACAGCTTGGCGACAGATTGCGTGGATCCAGCAGCTGTCCTTACTTTCCCCCTGAGCAGCAGCTGCAAGAAACAGGTGTCGTCCGGGTCAGAATCTCGCACCGACTCCTCTGATGACGAAGAGATTGATGTGGTGACGGTGGAACATAAACAGAACAAGTCTCGTTTGGTGAACGCCCGCAAGCCAGTGACCATCACTGTTCGTGCAGATCCGCACGACCCCTGCATGAAGCGTTTCCACATCTCCATTCACCAGCAACAGCACAACTATGCCGCCCGCTCTCCTGACAGTTATCCTGAAGAAGAGCCGCCCCGCAAGAAAATCCGTCAAGAAATCGTACAGCCACGATTGGCTTCAACACCTCAAACCCCAGAACGAAAAAGTCCATTACCTTCCCCATCAGTCCCTGCTCAGTCTCCAACTGTCTCTGCTTCGCCAACACATACATCCTACCACCTCAAATCACAACCATCCAGCCCGCAGAGTTCGGACTGTGAGGACACAGACAAGCGGAAGACGCACAACTTTTTGGAGCGCAAAAGACGAAATGACCTTCGCTCACGCTTTTTGGCACTACGGGATGAAATCCCAGGCCTGGTTGATTGTCCAAAGACACCCAAAGTTGTGATCTTGACTAAGGCGACAGAGTATCTCCGTACGCTGCATGTCAGCGACAGACAGAAGGCCCAGGAGAAGAAGCAGCTGAAAAGCAAGCAACAGCAGCTACTAAGGAGACTCGCGGAACTGAAACGTGCATAAATC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5561 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; pectoral fin; pectoral fin bud; pharyngeal arch; and presumptive neural retina. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor).

Ensembl:

ensembl_id ENSDART00000184875

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030294 lncRNA downstream 84489 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 183261 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030292 lncRNA downstream 336492 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029342 lncRNA downstream 452638 30347509 ~ 30354355 (-) False XLOC_014872
TCONS_00030291 lncRNA downstream 454857 30347509 ~ 30352136 (-) False XLOC_014872
TCONS_00029791 lncRNA upstream 20862 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00029371 lncRNA upstream 152395 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029413 lncRNA upstream 1814428 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029429 lncRNA upstream 2448244 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 2460249 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00029366 mRNA downstream 6911 30733321 ~ 30800082 (-) False XLOC_014881
TCONS_00029365 mRNA downstream 6989 30722767 ~ 30800004 (-) False XLOC_014881
TCONS_00029364 mRNA downstream 6989 30722767 ~ 30800004 (-) False XLOC_014881
TCONS_00029362 mRNA downstream 241871 30517311 ~ 30565122 (-) False XLOC_014878
TCONS_00029370 mRNA upstream 86927 30897255 ~ 30904590 (-) True XLOC_014884
TCONS_00029372 mRNA upstream 189505 30999833 ~ 31007417 (-) True XLOC_014886
TCONS_00029374 mRNA upstream 197573 31007901 ~ 31042709 (-) False XLOC_014887
TCONS_00029375 mRNA upstream 199368 31009696 ~ 31042597 (-) False XLOC_014887
TCONS_00029376 mRNA upstream 199369 31009697 ~ 31035155 (-) False XLOC_014887
TCONS_00029367 other downstream 7030 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029352 other downstream 375243 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029343 other downstream 456795 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 933878 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029333 other downstream 1021781 29785095 ~ 29785212 (-) True XLOC_014865
TCONS_00029373 other upstream 189505 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029380 other upstream 268998 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029381 other upstream 269850 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029389 other upstream 772924 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029399 other upstream 1268623 32078951 ~ 32150111 (-) True XLOC_014900

Expression Profile

//