RNA id: TU302958



Basic Information


Item Value
RNA id TU302958
length 522
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G266604
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48291845 ~ 48292366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttatttaaccaggtaggctagttgagaacaagttctcatttgcaactacgacctggccaagataaagcatagcagtgtgaacagacaacacagagttacacatggagtaaacaattaacaagtcagtaacacagtagaaaaaaaaggggagtctatatacattgtgtgcaaaaggcatgaggaggtaggcgaataattacaattttgcagattaacaacactggagtgataaatgatcagatggtcatgtacaggtagagatattggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaaaatgggtgggctgtttaccgatagactatgtacagctgcagcgctcggttagctgctcagatagcagatgtttgaagttggtgagggagataaaagtctccaacttcagcgatttttgcaattcgttccagtcacaggtagcagagaactgtaaggaaaggcggctaaatgaggtgttggctttagggatgatcagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU302953 lncRNA downstream 2868 48288645 ~ 48288977 (-) True G266599
TU302948 lncRNA downstream 5478 48286149 ~ 48286367 (-) True G266594
TU302942 lncRNA downstream 9336 48282186 ~ 48282509 (-) True G266588
TU302912 lncRNA downstream 41996 48249624 ~ 48249849 (-) True G266558
TU302903 lncRNA downstream 55271 48235725 ~ 48236574 (-) True LOC110520071
TU302959 lncRNA upstream 121 48292487 ~ 48292724 (-) True G266605
TU302967 lncRNA upstream 3186 48295552 ~ 48295855 (-) True G266613
TU302968 lncRNA upstream 3490 48295856 ~ 48296071 (-) True G266614
TU302998 lncRNA upstream 25018 48317384 ~ 48317636 (-) True G266644
TU304179 lncRNA upstream 212091 48504457 ~ 48505213 (-) True G267706
XM_021597082.2 mRNA downstream 22374 48233820 ~ 48269471 (-) False LOC110520071
XM_021597083.2 mRNA downstream 22374 48233820 ~ 48269471 (-) False LOC110520071
XM_021597081.2 mRNA downstream 121788 48114234 ~ 48170057 (-) False LOC110520070
XM_036974346.1 mRNA downstream 194156 48079101 ~ 48097689 (-) True LOC118958240
XR_005047293.1 mRNA downstream 225342 48065493 ~ 48066503 (-) False LOC118958229
XM_021597093.2 mRNA upstream 61043 48353409 ~ 48375756 (-) False LOC110520072
XM_021597095.2 mRNA upstream 61043 48353409 ~ 48378813 (-) False LOC110520072
XM_021597094.2 mRNA upstream 61043 48353409 ~ 48380073 (-) False LOC110520072
XM_021597101.2 mRNA upstream 61043 48353409 ~ 48393399 (-) False LOC110520072
XM_021597100.2 mRNA upstream 61043 48353409 ~ 48393433 (-) False LOC110520072
TU302595 other downstream 258543 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 692030 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 2754303 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 3187582 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 3279596 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 1203111 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 1210050 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 1271482 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 1271482 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 1574851 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile