RNA id: TU304685


Basic Information

Item Value
RNA id TU304685
length 1124
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G268166
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49282309 ~ 49283432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaactggaatgcatttcaattatcagggtgtaccttgttaaaagttaatttgtggaatttctttccttaatgcatttgagcaaatcagttgtgttgtgacaaggtaggggtggtatacagaagatagccttacttggtaaaagaccaagtccatattatggcaagaacagctcaaataagaaaagagaaacaacagtccatcattaccttaagacatgacggtcagtcagtacggaaaatgtcaagaactttgaacatttcttcaagtgcagtcacaaaaaccatcaagctctatgatgaaactggctctcatgaggatctgCACAGGAAAGgagacctctgctgcagaggataagttcattagagttaactgcacctcagattgcagcccaaataaatgcagagttcaagtaacagacacatctcaacattaactgtttagaggagactgcatgaatcaggccttcatggtcgaattgctgcaaggaaaccactactaaaggacaccaataagaaaaagagacttgcttgggccaagaaacacgagtaatggaaATTGAAGGCCTAAAAtctgaaatctgtcctttggtctgatgagtccaaatttgagatttttggttctttgtgagacgcagagtaggtgaatggatgatctccgcatgtgtggttcccaccgtgaagcatggaggaggaggagtgatggtctgggggtgctttgctagtgacactgtctgcgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattttatagcgatacgtcatcccatctggtttgcgcatagtgggacaatcatttgttttcaacaggacaatgacccaacacacctccaggctgtgaaagggctatttgaccaagaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacccaacctcaacccaattgagatggtatgggatgagttggaccgcagagtgaaggaaaagcagccaacaagtgctcagcatatgtgggaactccttcaagactgttggaaaagcattcctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304686 lncRNA downstream 118 49281439 ~ 49282191 (-) True G268167
TU304694 lncRNA downstream 31165 49250858 ~ 49251144 (-) True G268175
TU304656 lncRNA downstream 86414 49195663 ~ 49195895 (-) True G268137
TU304646 lncRNA downstream 96389 49185674 ~ 49185920 (-) True G268127
TU304641 lncRNA downstream 103066 49178818 ~ 49179243 (-) True G268122
TU304726 lncRNA upstream 2380 49285812 ~ 49286189 (-) True G268204
TU304727 lncRNA upstream 5838 49289270 ~ 49289492 (-) True G268205
TU304729 lncRNA upstream 7612 49291044 ~ 49291538 (-) True G268207
TU304730 lncRNA upstream 9197 49292629 ~ 49292853 (-) True G268208
TU304750 lncRNA upstream 67390 49350822 ~ 49405204 (-) True G268227
XM_036974384.1 mRNA downstream 207139 49057963 ~ 49075170 (-) False ccdc173
XM_021597129.2 mRNA downstream 220891 49057043 ~ 49061418 (-) False ccdc173
XR_005047660.1 mRNA downstream 231241 49047704 ~ 49051068 (-) False LOC110520089
XM_021597150.2 mRNA upstream 19601 49303033 ~ 49332307 (-) False LOC110520100
XM_021597148.2 mRNA upstream 19601 49303033 ~ 49332313 (-) False LOC110520100
XM_036974411.1 mRNA upstream 19601 49303033 ~ 49357448 (-) True LOC110520100
XM_036974412.1 mRNA upstream 107061 49390493 ~ 49412478 (-) False LOC110520101
XM_021597151.2 mRNA upstream 107061 49390493 ~ 49412480 (-) False LOC110520101
TU302595 other downstream 1249007 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1682494 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 3744767 45536332 ~ 45537542 (-) True G263274
TU299078 other downstream 4178046 45099340 ~ 45104263 (-) True LOC110520012
TU299080 other downstream 4270060 45010172 ~ 45012249 (-) True G262993
TU304852 other upstream 212045 49495477 ~ 49495803 (-) True G268310
TU304858 other upstream 218984 49502416 ~ 49502971 (-) True LOC118944672
TU304903 other upstream 280416 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 280416 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 583785 49867217 ~ 49871645 (-) True LOC110520119

Expression Profile