RNA id: TU303780


Basic Information

Item Value
RNA id TU303780
length 1673
RNA type TUCP
GC content 0.41
exon number 1
gene id G267358
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49510803 ~ 49512475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCGATCATGTGACCATTTATTAGAGCTACACCAAAGAATCAAACTTAAAATGGATGTCATCAATTAGAATGCATTTAAATCCCTTTGAACCACACTACACTCCCATTTCCTCATATTGAGACTTGAAGACACAGAATGACAAGAGGCTAAGTGTGTAATAAATGAGGTGAACAGATGGCGTGGTAATGAATGAGGAGTGCTGTACTCCTTAGTGGTCTAATGGTGCATCTGTCATTGCATTGCATTGCAGTGACTAGTCCAAGATTGTTAGATGGGGTGTAACGGCAGTTGTCTAAATGCCTTTATGAGTGCCAAGCCTGCTGTGCTCTTTGGGCTCTGTCCGATAACTTCTGGGTTTGGTTTCTTCAACCAGTCAGTTTTGATTTCACCACTGTAACTTCAGAAGCCAGCCCTCCAATCTCAAAAGCAGCATGGGTTCCAAACAGCACTGGTATTAAGATGCCTTAACAAAGCAATAAAGTCTGGTGGCAAAACATATTTAAAGTGGtaaaatatgtatatacataATAAATGATGTTTAATGGAATATAAAGTATATAAAAAtgtacaggaccagtcaaaagtttggacacacctactcacaccTAGGACACAcctattcaagggtttttccttatttttcctattttatacattgtagaaaaattgtgaagacatcaaaaccatgaaataacacatggaatcatgtactgtagtaatcaaaaaagtgttaaacaaatcaaaacatattttatatttgagattcttcaaagtagccatcctttgccttgatgacaggtttgcacactcttggcattctctcaaacagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcccttgttgggtgtttttccttcactctgtagtccaactcatccctaaccatctcatttgggttgaggtcgggggattgtggaggccaggtcatctgatgcagcaatccatcagtctccttcttggtcaaatagcccttacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgaaaaccagatggaatggtgtgtcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaagtaaatcacagacagtgtcatcagcaaagcaccctcacaccctAACATCTccgtgcttcatggtgggaaccgcacatgcagagatcatccgttcacctactctgtctcacaaagTCATGGCGGTTggtaccaaaaatctcaaatttggagtcatcagaccaaaggacagatttccaccggtctaatggccattgctcgtgtttcttggcccaagcaagtctcttcttcttattggtgtcctttagtagtggtttcttcgcagcaattcgaccatgaaggcctgattcacacagtctcctctgaacaattgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatttttgagtctggtaactctaatgaactctgtgtctttctttcctgtggcggtcctcatgagagccagtttcatcatagtggttgatggcttttgcgactgcacttaaagaaactttcaaagttcttgaacttTTCCGTATTAACTGACTTTCATGTCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303775 lncRNA upstream 7666 49502717 ~ 49503137 (+) True G267353
TU303774 lncRNA upstream 8105 49502496 ~ 49502698 (+) True G267352
TU303773 lncRNA upstream 9109 49500808 ~ 49501694 (+) True G267351
TU303769 lncRNA upstream 12477 49497927 ~ 49498326 (+) True G267349
TU303767 lncRNA upstream 14993 49495597 ~ 49495810 (+) True G267347
TU303787 lncRNA downstream 14568 49527043 ~ 49527306 (+) True G267365
TU303794 lncRNA downstream 23838 49536313 ~ 49536514 (+) True G267372
TU303796 lncRNA downstream 25018 49537493 ~ 49537947 (+) True G267374
TU303797 lncRNA downstream 26415 49538890 ~ 49539279 (+) True G267375
TU303799 lncRNA downstream 27373 49539848 ~ 49540334 (+) True G267377
XM_021597160.2 mRNA upstream 40057 49464651 ~ 49470746 (+) False dlx1a
XM_036974421.1 mRNA upstream 40057 49464651 ~ 49470746 (+) False dlx1a
XM_036974423.1 mRNA upstream 40057 49464651 ~ 49470746 (+) True dlx1a
XM_036974420.1 mRNA upstream 80721 49413492 ~ 49430082 (+) False hat1
XM_021597158.2 mRNA upstream 80721 49416164 ~ 49430082 (+) False hat1
XM_021597163.2 mRNA downstream 17503 49529978 ~ 49556157 (+) False itga6a
XM_021597162.2 mRNA downstream 17504 49529979 ~ 49557537 (+) False itga6a
XM_036974424.1 mRNA downstream 33714 49546189 ~ 49557537 (+) False itga6a
XM_021597164.2 mRNA downstream 47610 49560085 ~ 49563837 (+) True pdk1
XM_036974425.1 mRNA downstream 116771 49629246 ~ 49676777 (+) False LOC110520113
TU300304 other upstream 2678559 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2678599 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2678669 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 3325999 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 3431378 46075484 ~ 46079425 (+) True G263733
TU303803 other downstream 42023 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 324142 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 649826 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 1089827 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1386114 50898589 ~ 50900277 (+) True G269291

Expression Profile