RNA id: TU304893


Basic Information

Item Value
RNA id TU304893
length 1562
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G268350
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49555919 ~ 49557529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttattctgtttttattgcaatttgtcacaaaacacagtaTTCAAAACATCTGACTAGAGGAATGAATGACGAGCCAGTGATgagacttacattttttttttcttcaaagcaTGTTTTAGGTAGGCCTAGTACAAAATAGGCCTTTTCACACTGCATTGTTCTTAGCCCCAGGCTAGACTGGCCCTGGGCTAGCTTAGTCGGTGTTCACACAAACATTTGTTAACCCTGAGCTAAGGTGCAGTGTGAAAGCACCTAATGCTTCTCATTGATCACCATTCCACAGCAATTACCCTTTGAATAGCTTCCGTATCAAATGAAGTCTGTTAGGCCTACAGACAGCATTCATCAAGAAGATCACTTTCCGAAGTCGGCATTTTGGGGGTTTGTATTATGATTCTTATGTCAGGTGGCATCTCAACCTTCAAGACACACATAACAAATACCATTACTGAGTGCCTTCCTTCTTACTCAGGAATGCTCAAATAAAATTAGCGAAACAATAAACTGCATTTTACTGCTTCTTTCAAGCTCCAGTTTTCCCAGCTGCATGCTACTGAAGTATCACCCAGTACAGTATTTGCGTATATGAAATGGCTTTGACAGGGGCACTGTATTGGATAAACAGAGGTTTGGTGGGAATCAGTTAAATATCTCAAACTCATAACTGACATAACTGTCTTAGAAATATTCATAAAGGTGCTATTCTTTTCTAATTCGGGAATTGAGAGGCATTGCATAAACTTTGTACCTGTTTGACTTGTGTAGAAATGACATACCTTTTTTTGAATAATCAAAGTGCAAAGAATGAGTCCCAATTACAATATTATTCACATAATACCTGTAGCTACTTTTAAGTCTGTGCAGCACTAGAAAATCAGCAGTACCATTTACCCTTACTTATTATACTGAAAAGTAACttgggataaaaaaaaatgtaaaaagactTTGGCCAATgcatatctgttttttttttatacagataatgacaaaaataaatatacagtgtGCTAAAGTATTTAAATATatacaaaacatacagaatgttCCAGTCAATTCATTGCAGGGATTATACAATATGGAGATTGGATAAAACTGACTGCAAAAGAACACAGCAGAAAGATTATCTACAGCTAAACATTGGAGATTGAAACTCAATTCATCATGTCATTAAAAAAATTTATCAGTGGCAGATAATGGATTTCAAAGTCCCAATTTCCTTTTTCTACCCAAATGTAAGACGCGATGCTTCTAATTTCCTCAGATGCAACACAGGATAGATTTCCATCTGAGAGTCCTTGGGGAGAATAGAAAACGTTTATTTTGTAGTTTGCTTCCCAAAATGCAGTCATTGGATGTTTAGAAAAATAGGATATTGTATCTGACCGTATCCCAACAGTCAAGTGTCTCATGAGTAGCTCTCGTTCTCATTCCAGCTTGTCATCCACTGCTTTTTCTCAAAGGAATCCAGCTTGGCTTTTCCGTCTTTAAACTGACAAGCCTCCTTCTTGATCCGTACGGCATGGTATCTTGGAACGCTGTCATCATGCTTTGAGCGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304888 lncRNA downstream 6028 49549681 ~ 49549940 (-) True G268346
TU304874 lncRNA downstream 25504 49530231 ~ 49530464 (-) True G268332
TU304872 lncRNA downstream 27722 49527933 ~ 49528246 (-) True G268330
TU304871 lncRNA downstream 29792 49525950 ~ 49526176 (-) True G268329
TU304870 lncRNA downstream 30263 49525422 ~ 49525705 (-) True G268328
TU304894 lncRNA upstream 655 49558184 ~ 49558433 (-) True G268351
TU304910 lncRNA upstream 3823 49561352 ~ 49561761 (-) True G268358
TU304935 lncRNA upstream 53301 49610830 ~ 49611085 (-) True G268382
TU304988 lncRNA upstream 121478 49679007 ~ 49709073 (-) True G268428
TU305019 lncRNA upstream 168625 49726154 ~ 49727656 (-) True G268458
XM_036964921.1 mRNA downstream 52943 49494001 ~ 49503025 (-) False LOC118944672
XM_021597161.2 mRNA downstream 77851 49475978 ~ 49478117 (-) True dlx2a
XM_021597152.2 mRNA downstream 142855 49390493 ~ 49413113 (-) True LOC110520101
XM_021597151.2 mRNA downstream 143488 49390493 ~ 49412480 (-) False LOC110520101
XM_036974412.1 mRNA downstream 143490 49390493 ~ 49412478 (-) False LOC110520101
XM_021597166.2 mRNA upstream 6312 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA upstream 6312 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA upstream 7506 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA upstream 7506 49565035 ~ 49608114 (-) False LOC110520112
XM_036974439.1 mRNA upstream 237128 49794657 ~ 49802026 (-) False sp3a
TU304858 other downstream 52997 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 60165 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1522666 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1956153 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 4018426 45536332 ~ 45537542 (-) True G263274
TU304903 other upstream 6319 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 6319 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 309688 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 342644 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 882676 50440205 ~ 50442872 (-) True LOC110520139

Expression Profile