RNA id: TU304894



Basic Information


Item Value
RNA id TU304894
length 250
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G268351
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49558184 ~ 49558433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacttgaacccgatcaaacatctctggagagacctgaaaatagctgtgcagcaatactccacatccaacctgacagagcttgagaggatctgcagaaaagaatgggagaaactctccaaatacaggtgtgccaagcttttagcgtgatacccaagaagacttgaggctgtaattgctgccaaaggtgcttcaaaaaaagtacagagtaaagggtctgaatacttacgtagaTGTGATATTCCATTTGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU304892 lncRNA downstream 655 49555919 ~ 49557529 (-) False G268350
TU304893 lncRNA downstream 655 49555968 ~ 49557529 (-) True G268350
TU304888 lncRNA downstream 8244 49549681 ~ 49549940 (-) True G268346
TU304874 lncRNA downstream 27720 49530231 ~ 49530464 (-) True G268332
TU304872 lncRNA downstream 29938 49527933 ~ 49528246 (-) True G268330
TU304910 lncRNA upstream 2919 49561352 ~ 49561761 (-) True G268358
TU304935 lncRNA upstream 52397 49610830 ~ 49611085 (-) True G268382
TU304988 lncRNA upstream 120574 49679007 ~ 49709073 (-) True G268428
TU305019 lncRNA upstream 167721 49726154 ~ 49727656 (-) True G268458
TU305020 lncRNA upstream 169304 49727737 ~ 49728138 (-) True G268459
XM_036964921.1 mRNA downstream 55159 49494001 ~ 49503025 (-) False LOC118944672
XM_021597161.2 mRNA downstream 80067 49475978 ~ 49478117 (-) True dlx2a
XM_021597152.2 mRNA downstream 145071 49390493 ~ 49413113 (-) True LOC110520101
XM_021597151.2 mRNA downstream 145704 49390493 ~ 49412480 (-) False LOC110520101
XM_036974412.1 mRNA downstream 145706 49390493 ~ 49412478 (-) False LOC110520101
XM_021597166.2 mRNA upstream 5408 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA upstream 5408 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA upstream 6602 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA upstream 6602 49565035 ~ 49608114 (-) False LOC110520112
XM_036974439.1 mRNA upstream 236224 49794657 ~ 49802026 (-) False sp3a
TU304858 other downstream 55213 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 62381 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1524882 48032047 ~ 48033302 (-) True LOC110505248
TU302286 other downstream 1958369 47599218 ~ 47599815 (-) True G265988
TU299385 other downstream 4020642 45536332 ~ 45537542 (-) True G263274
TU304903 other upstream 5415 49563848 ~ 49565989 (-) False LOC110520112
TU304905 other upstream 5415 49563848 ~ 49567474 (-) True LOC110520112
TU305027 other upstream 308784 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 341740 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 881772 50440205 ~ 50442872 (-) True LOC110520139

Expression Profile


TU304894 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

TU304894 Expression in each Bioproject

Bar chart with 21 bars.
TU304894 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.