RNA id: TU304935


Basic Information

Item Value
RNA id TU304935
length 256
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G268382
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49610830 ~ 49611085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccaagactcttcctagagctggcctcaaCCGGGGGATAATTGTCTTGgtcaggaggtgaccaagaacccgatgatcactctgacagagctctagaattcctctgtggagatggtagaaccttccagaaggacaaccatctctgcagcactccaccaatcaggcctttattgtagagtgaccagacgggaAGCCACTTCtcactaaaaggcacatgacagcccgcttggagttttgccaaatggcacctaaagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304910 lncRNA downstream 49069 49561352 ~ 49561761 (-) True G268358
TU304894 lncRNA downstream 52397 49558184 ~ 49558433 (-) True G268351
TU304892 lncRNA downstream 53301 49555919 ~ 49557529 (-) False G268350
TU304893 lncRNA downstream 53301 49555968 ~ 49557529 (-) True G268350
TU304888 lncRNA downstream 60890 49549681 ~ 49549940 (-) True G268346
TU304988 lncRNA upstream 67922 49679007 ~ 49709073 (-) True G268428
TU305019 lncRNA upstream 115069 49726154 ~ 49727656 (-) True G268458
TU305020 lncRNA upstream 116652 49727737 ~ 49728138 (-) True G268459
TU305018 lncRNA upstream 119864 49730949 ~ 49731347 (-) True G268457
TU305023 lncRNA upstream 127137 49738222 ~ 49738450 (-) True G268462
XM_021597166.2 mRNA downstream 2716 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA downstream 2716 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA downstream 2716 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA downstream 2716 49565035 ~ 49608114 (-) False LOC110520112
XM_036964921.1 mRNA downstream 107805 49494001 ~ 49503025 (-) False LOC118944672
XM_036974439.1 mRNA upstream 183572 49794657 ~ 49802026 (-) False sp3a
XM_021597182.2 mRNA upstream 183584 49794669 ~ 49802026 (-) False sp3a
XM_021597183.2 mRNA upstream 183584 49794669 ~ 49802026 (-) False sp3a
XM_021597185.2 mRNA upstream 183584 49794669 ~ 49802026 (-) False sp3a
XM_036974441.1 mRNA upstream 183584 49794669 ~ 49802026 (-) False sp3a
TU304905 other downstream 43356 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 44841 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 107859 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 115027 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1577528 48032047 ~ 48033302 (-) True LOC110505248
TU305027 other upstream 256132 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 289088 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 829120 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1517355 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1862239 51473324 ~ 51474139 (-) True fgf9

Expression Profile