RNA id: TU305018



Basic Information


Item Value
RNA id TU305018
length 399
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G268457
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49730949 ~ 49731347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTACATGTTAAATATAAAAGATATTTGAGTGCATACAGTACAATTCAGAATTCAGCCCTAAAAGACTGAACTGTGTGCATTCCCTAAATCACAATTCTCACAAGCTCAAATTACTCCTAAAAAGATCCCTCGAGAGaacgtttaaaaatatatatttttgaagtaGTGTGAAGGATAATGTTCAAAGTAAACCTGCTGTCCAGTCTATTCAGACATGTAAACAGTTTCAAACAGCAAATGATCCTCAGCTTCGACCACTACAgccacctctaccccctctcctcagTCTTCCTCTGACCTGTTTATTGTCCTGTCGCGGTAACCTTTTCTGGCGCTCCACTTTGATCCATCCCCCCTCACTGACTTTAGCCCCCTCTTGCTCTGTACTGGAGTTTTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305020 lncRNA downstream 2811 49727737 ~ 49728138 (-) True G268459
TU305019 lncRNA downstream 3293 49726154 ~ 49727656 (-) True G268458
TU304988 lncRNA downstream 21876 49679007 ~ 49709073 (-) True G268428
TU304935 lncRNA downstream 119864 49610830 ~ 49611085 (-) True G268382
TU304910 lncRNA downstream 169188 49561352 ~ 49561761 (-) True G268358
TU305023 lncRNA upstream 6875 49738222 ~ 49738450 (-) True G268462
TU305031 lncRNA upstream 60401 49791748 ~ 49794617 (-) False G268467
TU305033 lncRNA upstream 60401 49791748 ~ 49793336 (-) False G268467
TU305032 lncRNA upstream 62161 49793508 ~ 49794617 (-) False G268467
TU305034 lncRNA upstream 62161 49793508 ~ 49794395 (-) True G268467
XM_021597166.2 mRNA downstream 122835 49563841 ~ 49608114 (-) False LOC110520112
XM_021597167.2 mRNA downstream 122835 49563841 ~ 49608114 (-) False LOC110520112
XM_021597168.2 mRNA downstream 122835 49565035 ~ 49608114 (-) False LOC110520112
XM_021597169.2 mRNA downstream 122835 49565035 ~ 49608114 (-) False LOC110520112
XM_036964921.1 mRNA downstream 227924 49494001 ~ 49503025 (-) False LOC118944672
XM_036974439.1 mRNA upstream 63310 49794657 ~ 49802026 (-) False sp3a
XM_021597182.2 mRNA upstream 63322 49794669 ~ 49802026 (-) False sp3a
XM_021597183.2 mRNA upstream 63322 49794669 ~ 49802026 (-) False sp3a
XM_021597185.2 mRNA upstream 63322 49794669 ~ 49802026 (-) False sp3a
XM_036974441.1 mRNA upstream 63322 49794669 ~ 49802026 (-) False sp3a
TU304905 other downstream 163475 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 164960 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 227978 49502416 ~ 49502971 (-) True LOC118944672
TU304852 other downstream 235146 49495477 ~ 49495803 (-) True G268310
TU302595 other downstream 1697647 48032047 ~ 48033302 (-) True LOC110505248
TU305027 other upstream 135870 49867217 ~ 49871645 (-) True LOC110520119
TU305117 other upstream 168826 49900173 ~ 49901538 (-) True LOC110520121
TU306341 other upstream 708858 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1397093 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1741977 51473324 ~ 51474139 (-) True fgf9

Expression Profile