RNA id: TU303932


Basic Information

Item Value
RNA id TU303932
length 2877
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G267503
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49791755 ~ 49794631 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTTTGTATGAAATAACAAGATACCCTCAAAAAGTGGACATTGTACAATTGTTTCCCTCAAAACAGAATAAAATCAATGAAATGAATACCACGTTACAAACATGTTTATAATGATCCACGACAAACATCTGGATTGAAACTTTTTGAGATTGTAAAAATTACATGTTCACTTCTAAACGTGAATCTGTGAGGTATAATATAGTGTTTTGTTAATGACCACACAGGGTATAATACGTTTCAATGATATCATGGTGGACTTAAagccactggggggggggggggggccttctGAGTTGAAGACAACTTCCCAGAACCAGTCACTACAACAGCAGATACAATGCGCACAATTCACTTTCTTCAATCTTACATTTCATAATCTGAATAATAACATAGATATATTACTACAGAAAAGGGAGTCAAAATAACACTCCGATTAAAAGAaataagacagagacagaaacatttacTGACAAAAAATAAACGAGGATAACCATCATGGGCAGTATACAAATACGTTTAAACAAAAAGGGAATGATCAAACTACAGATGAAGAGAAGAGTGCTATTAAGAGAGTACTGCCTCGTGCGATACCACTTCACTTCTGTCTTAGAGGGCTGATTGAGCAAGGCGCAGACACAGAGCGCATCTCTTTACCGAACTATTTCATAAAGGTAAGGGGGGTGGGGGTTGTCATCTAAGGACCCTGACATACAGTTTATAGAGCATAGGTAACACGGTGACAGCATAATTCCAACTATGCTTTTGGTCCATCGAATAACACCTCTCTACACAACACCCCACAACATCTCTAGGGGCTACAGGGGAGGATTGTTCTACCGTGCATGACCAAGTCACCCTGAGATTAAAGTCAAATTTGGCAATTCAACCCCTTAGCatggcttcttttttttttctttctaaaaATGACTCGACTTTCTAAATTGTGAGTCATTTAGAAATCACGTTTTTACAAAATAAACACATCTGAatattacactatacacatttAAAAAGCCATTTAAAGAGCTTGGAGTTTGAGATACCATAAAACCAGTTTACGATGATATAGCTGTTCATTAAAAATACTTGATTTGCAAGAAATGCATATTACAACATCCGATCAATTGTAGAAGTTCAATAGAAATTATTATACAACATTTTAAATATGCCATTGTTTTCTTTTTGCCATCTGCGATATTATTCAGGATGCAACGGAGCGGGATGTGGGTAAAGCTTGCTGATGGTTTTAGGCAAGCACAAATATGACACAAACATAAATCAGGAAGACCGtactaatgtttttttttttaaaggattttGACACAGACCTATCCATGGCTGTCATCAAAAAAACGTAACAAGGGTTTTAGGCTGGCAATAGCCAATCGCTTCATTTCTATGCCATTTTTTTTAACACACATTTAACTCAAACCTTTAAACAATCGACAGTAGCTTAATAACTATGCACCGTTCCCCCCTTTTCAACTCCACAATATGATAGAAAATAAGGCATTTCAGTGCGTATGTATTGGAACCACATTTAACGCTTTTCTTTGCACCCCCACCCCAGTAAAAAGACTGCTTACAGACATACATAtagagtcaaaagtttggacacacctacacattaaagggtttttctttattttactatttaacaatatagtgaagatatcacaactatgaaataacacattaaatCATGTAGTATGCAAAAAGTGTAAAATCAAAATATAGATTCTTCAAagatccaccctttgccttgatgacagcattgcacactcttggcattctctcaaccagcttcatgaggaatgcttttccaacagtcttgaagcagttcccacatacgccgagcacttgttggctgcttttccctcactctacagtccaactcatcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggccatctgatgcagcgctctatcactctccttcttggtcaagtagcccttccacagactggaggtgtgttgggtcattgtcctgttcaaaaacaaatgatagtcccactaagctcaaaccaaaaaggatggcatatcgctgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcagtgtcaccagcaaagcactcccacaccttcacaccacctcctccatgcttcacggtgtgaaccacacatgcagagatcatctgttcacctactctgcgtctccaaatctccaatttggactcatcagaccaaaggacagatttccaccggtctaatgtccattgatcgtgtttcctggcccaagcaagtctcttcttcttattggtgtcctttagcagtggtttctttgcagcaattcaaccatgaaggcctgattcacagtctcctctgaacagttgatgtgctgagatgtgtctgttacttgaactctgtgaagcatagtttttgcgactgcacttaaaaaaactttcaaagttcttgaaatgttccgcattgactgaccttcatgtcttaaagtaatgatgatgacctagtgtcatttctctttgtttatttgagctgttcttgccataatattgacttggtcttttaccaaatagggctatattctgtataccaaccctaccttgtcaaaacacaactgattggctcaaatgtattaaggaaagaaattccacaaataaacttaacagcgcacacctgttaattgaaatgcattccagatgactaccccatgaagctggttgagagaatgcaaagctgtcatcaaggcaaagggtggctactccgatgaatctcaaatataaaatatatatttgttttgttttacactttcttggttactacatgatt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303899 lncRNA upstream 44053 49744473 ~ 49747702 (+) True G267471
TU303852 lncRNA upstream 176910 49614584 ~ 49614845 (+) True G267427
TU303838 lncRNA upstream 180336 49611075 ~ 49611419 (+) True G267416
TU303807 lncRNA upstream 226563 49563888 ~ 49565192 (+) True G267385
TU303749 lncRNA upstream 234469 49556632 ~ 49557286 (+) True itga6a
TU303989 lncRNA downstream 66745 49861376 ~ 49861654 (+) True G267546
TU303990 lncRNA downstream 72584 49867215 ~ 49867792 (+) True G267547
TU304034 lncRNA downstream 111831 49906462 ~ 49951847 (+) True G267579
TU304035 lncRNA downstream 114263 49908894 ~ 49909998 (+) True G267580
TU304001 lncRNA downstream 146153 49940784 ~ 49946014 (+) True G267555
XR_005048018.1 mRNA upstream 24399 49757817 ~ 49767356 (+) True LOC118959582
XM_021597179.2 mRNA upstream 56293 49731876 ~ 49735462 (+) False cdca7a
XM_021597181.2 mRNA upstream 56293 49731876 ~ 49735462 (+) True cdca7a
XM_036974435.1 mRNA upstream 59818 49676929 ~ 49731937 (+) False zak
XM_021597189.2 mRNA downstream 67608 49862239 ~ 49865998 (+) True LOC110520117
LOC110504188 mRNA downstream 77176 49871807 ~ 49874217 (+) True LOC110504188
XM_036964928.1 mRNA downstream 250087 50044718 ~ 50063834 (+) True LOC118944674
XM_021584389.2 mRNA downstream 340064 50134695 ~ 50136597 (+) True hoxd13a
XM_021597211.2 mRNA downstream 344582 50139213 ~ 50141004 (+) False hoxd12a
TU303803 other upstream 235917 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 279280 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 2959511 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 2959551 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 2959621 46831008 ~ 46832134 (+) False LOC110520046
TU303972 other downstream 41986 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 367670 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 807671 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 1103958 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1779349 51573980 ~ 51578683 (+) False LOC110520169

Expression Profile