RNA id: TU305043


Basic Information

Item Value
RNA id TU305043
length 7637
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G268470
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49922997 ~ 49930662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGTCAGCGCTATCGCTAATGAAACATTCCGCTTATGAAACATTCCTTGTAACTTTAATGCGCAGGGAGCTGCAGCTGTGAGGACTTCTCTCTGGTCATGCGGGGGAGTGTTACACAGGTCGCACGGTTGCATAACCACAGAACactgagagagatggacagagtggTCGCAACAAATGCAGGTATTAATACCAGGCCGCTATGATCTGTGAACTTCTCAACCAACGCTCTCTGTAATCCCTCCCTGCTATCCTTCAGCAGTTTCACGAAGAGACATCTAAAGGCAGTAGAGTTTATCTGATAACTGGGATTAGATAAGTTTTAAATCTGTGGACAATGTATTCGATTGCTTTTTGGAGAGGATTAATGTTGCTAGCGTATGCTGATCGCCATCCGTTGTTCAGTCAGAGACAGAACATCGTTGTTCTAATATTAGACATGGACAAAGATAGTAGACGTTTGACCAGAGAATGGTCAGTCTGAGTTTACATTTGCTGGTTATTTAACATATTTAATGAGATCGACAAGTCATTCTTATCAAGGTTGACTGGTACAGTTTCTCTAATATAGCTAAATGAGCATGTTTCGAGTTGATGAAAGGTCATCGTTGTTCaggagagagatactgtatatccCTATACCCCACATACCAGTGTAGTGTGGAttaacacacagtacagtacctatgCATCCCATAAGCTGCGTGGATGTGTCCTTGTATAACCCTGCTGTGTGGAATCCACTGTGGATGGCAAAGTGGGATAGCAGCACAGCATACATCACTGTCGAGGCAACAGCCAAAATCACAGCCAGGTAATGTATTTGTCTTGGAGGAATACGGTGTGAATGGTCTCTCTTTTTTGCCAGGCAAGCAAAAAGGGTGAGATTTTCAGCAACAGTACCATTTCCCGGGGAAAGGTTGCCCAAGCCACAGCTGTAATGATATCAGTACTGAACTGTAGTCTTCCCCTCTATGGAAGCTCTCAATGTGGGGGGATGCGTAATGAGCAGGTACAGTAGGGATGGTTCCATTCTGTTGCCAGATTTCAGTGGATTGTTCTCTTGCCACTCAGTCAATTAGCCATTAGGCCATAGTTGATTCCATCCATCACAGTTCCTAATGAGGACAAATTGATAAGCCCCAATTTAGAGTGGTACTAGTCTGGGTACCACTCTGTTTAGCAATCATTGCACTCATGTCATGATAAACACTCTTTGCCatctttaatttaactaggcaagtcatttaagaacaaattagtatttacaatgacggcctaccctggccaaaccctaacaacgctgggccaattgtgcacttccctatgggactcccaatcacggctgattgtgatacagcctggaatcaaaccagggtctgtagtgacacgtctagcactgagatgcagtgccttagactgctacgCCACTCAGAAGCCCAACATATCACATGGAGTACAAGGAGTTGAATGGAGTCACATGGAGTACAAggagactagacgtaacatagtataTGTAAAtcagggacactcaaattagtatgatatgttacgtttggtatggttacctaagacaaacagttgaagtcggaagtttacatacaccttcgccaaatacatttaaactcagtttttcacaattcctagtaaaaatcccctgtcttaggtcagttaggctcaccactttgtcttaagaatgtgaaatgtcagaataatagtagagagaacgatttatttcagcttttatttatttcgtcacattcccagtgggtcagaagtttacatacagggctttgtgatggccactccaataccttgactttgttgtctttaagccattttgccacaactttggaagtatgcttgtggtcattgtccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttttgatgccatctattttgaagtgcaccagtccctcctgcagcaaagcatccccacaacaggatgctgccacccccgtgcttcacggctgggatggtgttcttcagcttgcaagcctccccctttttcctccaaacataacgatggtcttcatggccattatgaccatttttgtttcatctgaccagaggatatttctccaaaaggtacgatctttgttcccatgtgcagttgcaaaccgtagtctggcttttttatggtggttttggagcagtggcttcttccttgctgagcgacctttcaggttgtgtcgatataggactcattttactgtggatatagatacctttgtacctgtttcctccagcgtcttcacaaggtcctttgctgttgttctgggattgatttgcactttttgtatgttcatctctaggagacagaacgcgtctccttcctgagcagtaggacggctgcgtggtcccatggtgtttgtacttgcatactattgtttgtacagacgaatgTGGTACCATCAGGTGTtctgaaattgctcccaaggatgaaccagacttgtggaggtctacaattttttttctgaggcattggcttatttttttacattttcccatggggtcaagcaaagaagcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaatgatgtcaattagcctatcagaagcttctaaagccatgacaatattttctggaatttttccgagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgatccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaatgacttgtgtcatgcatgaagtagatgtcctaacttgCAAAAAcaacagtttgttaacaagaaatttgtggagtggttgaaaaacgagttttaatgactccaacctaagtgtatgtaaacttccgacttcaactgtatggttacttaaggcaaaacgAAAGTAAGGTcgttggtcggggtggatgggtgggcatATAACACTAACGTCTAGCAACTCAAAGGTTGccagtttgaatctcatcacagacaactttagctaattagcaactacttagcatgttagctcacattaaccctttaacctaactcctgaacttgagcctaaccttaaccctaaccccaacacctAATCTAGCTAATTAAGCAACCTAGCCAcatagctagaattcgtaacatatcatacatttagaAAATTTGTGACATATTGTACGTTTTACATATTGTATGTTTAGCAATTTCCTAAGCTATAATACAacttgtaacatactgtatcatgtgAAAAATGGTGATGGACAtctacaaattaatacataccatacgaaacttaacatatcatactaagtGGAGTGTCTCAGTTTACGTACTAAATAATACGAAATTGTCACGtccactcccattccccctcTCCAGCGTCGCCGGTCTGCTAACCActggtcctggcaacccatcctgacaaacacctggcaaccttcattacgcacacctgcgcctcattaggcacacctggacttTGTCACATCCCTGATTACTGCCCCTTTATATAGCACTCCATTGTTGTCACCAACCAGGCAATATTGTTTATGTTTCCATGTTTAGATGCGTTTCTTGTTTTTTATCGTTCAATGGTCTTCATCATTAAACTCACTAACtgcacttgcttcctgactcaTTGCATCTACGTTACAGAATATTGCCTCCCAGAATAGAAGCAGCAGCCAACCGAGACAGATTCACGGCGAACAGGAAGACCTACTTCGCCAACACCACGATCAGCTGGTGCAACTGGGGACGGCAATGGATGAGGTCCTCTGCATTCTTCAATGTCTAGATCTTCCCCAAGGGGCATCACTCCCAACGAGCGGAGGATCCTCTACCATGAGTCGACCCAGCAAGCCAGTACCCCAGCCTATTCAGCAGTCTACCTAGATCAGCGATGCCCGTTTGTCCCTTTCAGACAAATATGACAAGACTCCATCCAAATGCCGTGGCTTCCTCTTCCAGTGCTTCCTCTATTTTGCCCATCAAAGGGGAGGCCTCACCTCCAAGTTTGCCATGATTATTTTTCCAGTTGACCGGGCGGCGTTGGAATGGGCCACGgccgtctgggagagaggagaggaggagctgggTTTCTATGGGAgattcatggctctgttcagagTAGTCTTCAATCGTCCACCGGAGGGCAGAGAGGGGTGTGAGCGCCTACTGGAACTTCGTCAGGAGGACCAGACCGCTGCGGAGTACACCCTCACCTTTCGTACAGTGGCAGCAGCCAGCTGATGGAATGAGCCGGCGCTTCTCACCTTATTCAAGGTCCAGACGGAGCTAGCATGCCCAGACGACACCCTCTCATTGGACACACTCATCGCGATGGCCATCCGTCTGGATAACCTCCTTTGTGAGCGTCAGCACCCTCATcgcatctctccctccttcgttGACCCATCTGAGTCAGTGCCTGAACCCATGGATGTAGCGGCCACACCTCTCCCTGCAGCTGAGCGACGCCGTCGGAGACAACTGGGCTCTGTCCCTATTGTGGCCAGGAGGGACACCAGCTTCAACGGTGTCCGCTACGTTCTAACCCGAGAGTCACTAGAGCAGAGGGATGGTCCAGTGATCATCCGTCTCCTGGGGTAGGTGTGAGTATCCCATCATCTTCACTCTCCACCAAGGCTTCTTAGTACAGATTTCACTAGCGGGCTGTCCCTCATGTGTTGTTTCCACAGCTCTAGTGGACTCCGGAGCTGCGGGGAATTTTATTGACCAGGCCCTTGCCTCCTCCCTGAACATGACATCATACCCGCTCTCCTCTCCGTTTCCGGTTCAAGCACTGGATAACCGACTACTGTGGTTGCCTTCCAGGCTGACATCCCGGAGGTTTACCAGGATCTCCGTGAGGTTTTCTTCAAGACTTGCACCACCTGCACCTCCTCATTGCCCTTGGGACTGTGCCATTCACCTGCTAACAGACTCTGCTCCTCCGCGCAGCCACATCTACCCCCTGTCGGTGTTTGAAACCAAGGCTACGAGGAGTACATCCAGGAGGCTCGTCAACAGGGTTTCATCCGCTCATCCACCTCCACTGCTTCGGCTGGTTTCTTTTTTGTGGCCAAGAAGGAGTGGCGTCTTTGTCCGTGTACTGACTAGAGAGGTCTCAATGCCATCACCACCAAGTACCGCTACCCCCTCCCGTTTGTGCCGGCCGCCATTGAACAGCTCCGCGGGACACAGTTGTTTACCAATCTGGACCTGCGGAGTGCATACAATTTGATCCGCATCCAGGAGGGGGGATGAACTGAAGACGGCCTTCAGTACGGTGTCTGGACACTACGAGTACTTGGTGATGTCTTATGGTTTAGCCAATGCTCCCATCGGTGTTCCAGGCATTCTTGAATGAGGTGTTTTGAGACATGCTTGGGCGCCAGGTGGTTGTGTATGTCGACGACATCCTGATCTACTTGGCCACCTTGGAGGAGCACATCGTCAACGTCAGGGTAGTACTGGGACGCATCCTGGAAAACCATCTGTACTTGAAAGCTTAGAAGTTCCATCAGGTCGCCGTCTCCTTCTTGGGATATCGGATCAGCCTACATAGAGTGGTTATGGAGGAATGGAAGGTAGATGCGGTCAGGTCAAGGCCAATCTCAAACAGTATAAAGGGACTACAATGGTTTTTGGGGTTTGCCAACTTTTACCGCCGATTTCAGcaggtcttccggcactatggcctTCTGGAGGATATCGTCTCTGACCGTGGTCCCCAATTAACGTCACGTGTATGGAGAGCCTTTGTGGAGAAGCTGGGAGTCACTGTCATCCTCAAATCCAGATACAGCCCTAGGTACAACAGGCAGGTGGAGAGGAccaaccaggagctggggaggttcctgaggagtcactgTCAGGACTGGCAGAGGGAGTGGGCCTGGTTTCTTCCCTGGGCGTAGTACGCCCAGAAGTCCCTTTGTCACTCCTCCACTGGGTTGTCTCCCgtctagtgtctcctgttgtaCCAGCCGGCTCTGGCTCTGTGGACCCCGAGCCAGACCAAAACTCCTGCGGTGGATGAGTGGTTCCGGCACGAAGGTAATGTTTGGGACGCTGCCCACGTGAGGCGTCAGAATGAGCAGGCGGACCGAAACCACAATGAGGCACCCGTTTTTCATCCTGGTGATCGCGTCTGGCTCGCCACCAAGAACCTACCCCTATGCCTGCCCTACCGGAAGCTGAGCCCCCGGTTTGTGTGGCCATTTAAAGTCCTCCGGAGTGTCAATTAGTTAACTTACCGATTACAGCTTCCCAATGACTACCGGATCTCACCCTCTTTTCACGTTTCCTTCCTCAGGCATgtggttcctggtcccctggcTGATGCCGTCCCCCATGACAGGAGTGGTGTTGGGTTCTGGTGGACGACTTTCTAAATCCCAACATCATCCGAGATTTCCCCCTTCGCTGTCAGGACCGGGCCGCTCCTCGTCCTTGGGACCATCCTCCTGGCTGGTGttccccctctctggcgctctaCGTCGCCAGTCTCCTAACCACGGTCCTGGCAACTCATCCtgatgcacacctggcaaccttcaTTACGCAGACCTGCGCCTCATTAGGACttcatcacctccctgattacttCCCCTTTATACACTGCCTTCGGaaatactttttccacattttgttacatctcagacatctacacacaataccctataatgaaaaagcgaaaacaggttttgagaaatgtttgcaaatttaaaaagaaagaatgaaggaaataccttatttacataactattcagaacctttgctatgagactcgaaattaagctcaggtgcatcctttttccattgatcatccttgagatgtttctacaacttgattggagtacacctgtggtaaattcaattgattggacatgatttggaaaggcacacacctgtctatataaggtcccacagttgacagtgcatgtactgtatgtcagagcaaaaacaagccatgaggtcgaaggctttgtccgtagagctcagagacaggattgtgtcgatggtcactctgacagagctctagagtttctctgtggagatgggagaacctgaGTACTGctgcaaagggtctgagtactgagtaaagggtctgaatacttatgtaactgtgttatttcagttttattttaataaattagcaaaaatgtatagaaaactgtttttgctttgtcgttatggggtattgtgtagttttatgagaaaacaacaacaattgaatacattttagaaaaaaggctgtaaagtaacaaaatgtggaaaaagtcaaggggtctgaatactttccgaatgcaccgtataacACTCCGTCATTATCACCCACCAGGCAATATTGTTTACGTTTCCATGTTCAGACGCTGTTCTTGTTTTGTATCGTTCAATGTTCTTCGTCATTAAACTCACTAACTACATTTGCTTCATGACTCCCTGCGTCTACGTTACAGAAATGCTCCGAGACCAGGTTGGGTTCCCAGGCTAGAGTTGTACAGCTCTTTATGAAACACTGTATTGAGAACTGTGGACTATCAGACAGCCACTCTCTTAGGGTTGTTAGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305030 lncRNA downstream 41177 49879111 ~ 49881820 (-) True LOC110520120
TU305075 lncRNA downstream 116327 49806408 ~ 49806670 (-) True G268502
TU305074 lncRNA downstream 117818 49804977 ~ 49805179 (-) True G268501
TU305032 lncRNA downstream 128380 49793508 ~ 49794617 (-) False G268467
TU305034 lncRNA downstream 128602 49793508 ~ 49794395 (-) True G268467
TU305123 lncRNA upstream 10214 49940876 ~ 49945765 (-) False G268548
TU305125 lncRNA upstream 10214 49940876 ~ 49945765 (-) True G268548
TU305138 lncRNA upstream 30253 49960915 ~ 49961213 (-) True G268560
TU305266 lncRNA upstream 115264 50045926 ~ 50046290 (-) True G268673
TU305294 lncRNA upstream 147122 50077784 ~ 50077987 (-) True G268700
XM_036974450.1 mRNA downstream 2669 49905433 ~ 49920328 (-) True LOC110520122
XM_021597197.2 mRNA downstream 2670 49905433 ~ 49920327 (-) False LOC110520122
XM_021597196.2 mRNA downstream 21422 49895327 ~ 49901575 (-) False LOC110520121
XM_036974448.1 mRNA downstream 21422 49895327 ~ 49901575 (-) False LOC110520121
XM_036974447.1 mRNA downstream 27887 49879110 ~ 49895110 (-) False LOC110520120
XM_021597199.2 mRNA upstream 31805 49962467 ~ 49978117 (-) False atf2
XM_021597200.2 mRNA upstream 31805 49962467 ~ 49978117 (-) False atf2
XM_036974452.1 mRNA upstream 31805 49962467 ~ 49978120 (-) False atf2
XM_021597198.2 mRNA upstream 31805 49962467 ~ 49978892 (-) True atf2
XM_021597204.2 mRNA upstream 48534 49979196 ~ 49981815 (-) False LOC110520125
TU305117 other downstream 21459 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 51352 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 355523 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 357008 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 420026 49502416 ~ 49502971 (-) True LOC118944672
TU306341 other upstream 509543 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 1197778 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1542662 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1666737 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1667273 51597935 ~ 51600230 (-) True il1rl1

Expression Profile