RNA id: TU304069



Basic Information


Item Value
RNA id TU304069
length 281
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G267608
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49975726 ~ 49976765 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGGTCTATTAGAGGATGGGACTTGGGTAATTACAGAGCTAGATGTTGGCGATGGGAGAGCTTGCTGTATAACAACACTAGCGTCTGAGGTTGCTAGGAGTACATTTGGGACTTGGAGGGATGCaggatggactatagtagaggTTGGCAGTGAGGTCGGCTGCAAAGATACCTCCTTGTCGTCACTTGTTGTAGATTCCGGATGGGGCAGAGGGCTGCCCCGATGTGCCTCCACAGCTGAGTGGTCCTCAATTTTATTTTGTATGATCATTGGTGTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU304051 lncRNA upstream 18345 49957073 ~ 49957381 (+) True G267596
TU304049 lncRNA upstream 19860 49955516 ~ 49955866 (+) True G267594
TU304034 lncRNA upstream 23879 49906462 ~ 49951847 (+) True G267579
TU304001 lncRNA upstream 29712 49940784 ~ 49946014 (+) True G267555
TU304035 lncRNA upstream 65728 49908894 ~ 49909998 (+) True G267580
TU303996 lncRNA downstream 2451 49979216 ~ 49981768 (+) False G267551
TU303997 lncRNA downstream 2451 49979216 ~ 49981768 (+) True G267551
TU304076 lncRNA downstream 9186 49985951 ~ 49986164 (+) True G267615
TU305202 lncRNA downstream 59058 50035823 ~ 50036023 (+) True G268618
TU305204 lncRNA downstream 66568 50043333 ~ 50043543 (+) True G268620
LOC110504188 mRNA upstream 101509 49871807 ~ 49874217 (+) True LOC110504188
XM_021597189.2 mRNA upstream 109728 49862239 ~ 49865998 (+) True LOC110520117
XR_005048018.1 mRNA upstream 208370 49757817 ~ 49767356 (+) True LOC118959582
XM_021597179.2 mRNA upstream 240264 49731876 ~ 49735462 (+) False cdca7a
XM_036964928.1 mRNA downstream 67953 50044718 ~ 50063834 (+) True LOC118944674
XM_021584389.2 mRNA downstream 157930 50134695 ~ 50136597 (+) True hoxd13a
XM_021597211.2 mRNA downstream 162448 50139213 ~ 50141004 (+) False hoxd12a
XM_021597212.2 mRNA downstream 167890 50144655 ~ 50146492 (+) True hoxd11a
XM_021597213.2 mRNA downstream 170046 50146811 ~ 50153227 (+) True hoxd10a
TU303972 other upstream 120224 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 419888 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 463251 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 3143482 46831008 ~ 46832244 (+) False LOC110520046
TU305367 other downstream 185536 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 625537 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 921824 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1597215 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 3190187 53166952 ~ 53172428 (+) True acvr2aa

Expression Profile