RNA id: TCONS_00029381


Basic Information

Item Value
RNA id TCONS_00029381
length 887
RNA type processed_transcript
GC content 0.41
exon number 6
gene id XLOC_014888
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 31079326 ~ 31083973 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGAGGAAGTCAAGTCAAGTCCGCCATTTCATCTTCTTCTTTTTATCggAAAAGAAAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTTACTTCATCATCAAGCACACCagGTGGTGCGGTGCACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAAtgtttctggttcgagcctcggctgggtcagttggcatttctgtgtgaagtttgtatgttctccccgtgttggcgtgggtttcctccgggtgctcctgtttcccccacaagacatgcggtacaggtgaattggctcagattgtgatggacctggaatgcgacaccaatcagccttaagtcaaGATCCAAATGAAGCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATTAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACTATATCAAGATCTGCGGTCAGTTCAAAGGTACTTTCACTAATTACCAAGATTTCAGACTATGAATTGATGGAGAAAACTTTGAGTGTCAGATCTTCCTACATCCCCTAGCAAAAATTCTTCCCAGTGTCTTGTAGTAGAAGTGATGCAGTCAATCGAGTTTACATTATTTCGTAAATTGCTttctgatttaataaaaaatatattaaccaaacttgattaatgtaacAATTTTGATGAAAAGGGCATGTTTTACTAGAGCTTTTAGCACAAAGGCACCCCCATCTTGGAATattgctgtgtctgacgtcacggggTTGGTATGCTAGAAACGTTTTTGAATGAGGTATTTGTATAATTTATACATAGTCTGTCTTAAAGCGTCACTAAATtgtacaggtcaaagcaatctgttgttac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139129

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029371 lncRNA downstream 114517 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 245081 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 357674 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 456446 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030292 lncRNA downstream 609677 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029413 lncRNA upstream 1540783 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029429 lncRNA upstream 2174599 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 2186604 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00030295 lncRNA upstream 2698810 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 3104219 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00029374 mRNA downstream 37469 31007901 ~ 31042709 (-) False XLOC_014887
TCONS_00029375 mRNA downstream 37581 31009696 ~ 31042597 (-) False XLOC_014887
TCONS_00029377 mRNA downstream 37581 31016369 ~ 31042597 (-) False XLOC_014887
TCONS_00029379 mRNA downstream 37608 31021108 ~ 31042570 (-) True XLOC_014887
TCONS_00029378 mRNA downstream 44853 31018771 ~ 31035325 (-) False XLOC_014887
TCONS_00029382 mRNA upstream 255332 31339305 ~ 31341850 (-) True XLOC_014889
TCONS_00029383 mRNA upstream 263702 31347675 ~ 31372896 (-) True XLOC_014890
TCONS_00029384 mRNA upstream 308377 31392350 ~ 31402429 (-) True XLOC_014891
TCONS_00029385 mRNA upstream 353716 31437689 ~ 31522677 (-) False XLOC_014892
TCONS_00029386 mRNA upstream 353718 31437691 ~ 31522625 (-) True XLOC_014892
TCONS_00029373 other downstream 72761 30999833 ~ 31007417 (-) False XLOC_014886
TCONS_00029367 other downstream 280215 30752809 ~ 30799963 (-) True XLOC_014881
TCONS_00029352 other downstream 648428 30429332 ~ 30431750 (-) False XLOC_014875
TCONS_00029343 other downstream 729980 30349303 ~ 30350198 (-) False XLOC_014872
TCONS_00029339 other downstream 1207063 29861859 ~ 29873115 (-) False XLOC_014868
TCONS_00029389 other upstream 499279 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029399 other upstream 994978 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029400 other upstream 1246540 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029412 other upstream 1540783 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029414 other upstream 1565694 32649667 ~ 32649781 (-) True XLOC_014908

Expression Profile

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