RNA id: TU306336


Basic Information

Item Value
RNA id TU306336
length 1292
lncRNA type antisense_over
GC content 0.49
exon number 4
gene id G269649
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50365876 ~ 50372026 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGGGTGGCCGGCTGGCCCACCGATTGGAGGTCAGTAAATACCGGGCGATAACACCGGCATCATTTACCCTGGCCTATTGCCTTCCAGTATTAGCAATCTTCTAATTTTTAACCTTCCCCGCCTTCGAGAGAAATTGCGATTTAATATCACAGCTGATTCACTGCATGCTGTTTCTGACAGGCGTGATGAATAGCCTAAAGTGATGTATGAAACCGGCCAGGCGGATGGCAATATAGATAAGGTAGCCATTTGGGTTAGCCCTGATAGGGTACCAACAGAGCCGTTTTCCCCCCTCGCTCCCCTGCTCACGTTTCATTTGGCCCGTGTTGAACAAAAGAGCCACAGCAGACTGTCTGCACTGTGGGGAAGTTTGGACACCCCAAGGAAGCAATGAAAGGTCTCCTCCTAGCCAAAACAGAGGCTTTCAAAAGACTGTTCTGTGCCTGTTTTCTTACGTAGAGCAGCATACCGACAGAGCCTGTCAGACTACCCTAATGGGACTTCAAACCACTGCCCTGCCACTCATCTCTAAGTGAGGAGGCAGGGCAGTAGTATGAATGCTGTCGGGTTTTGGAGCCAAAAGGAACAGTGCCAAAACGTGCTGACATGGTTAGATGTAGGGATACTTCTAGATGTAGGGATGTTCACTTGACTGTACCTCCGTGGTGGTGCGAGAGGCTTCCTCCATTGGCTAGGATCTCCTCTCTAGCGGCGTGCTCCACTCGTTCATATGTATGTACTGGGTCCGCCAGTCCTCTGTAGTTGAAGGCAAAGTAGAAGTAAACACACGCGCCAGCGTCATAGGTCTGAGTCACTCTGCATGAGGTCAAGGGTTGAAACTGGACCCCTCGCTCTTTACACTCTCGGTTAATACGCTCTTTGACATTCCGGCAAAGGTCCAACACCCTGTCCCAAGGCACCGATGTCTCAAATGATTCTGCGACCACGTAGTAGTCCATCCCCAAGTCCTGTTAAATAAACCGCAAGACAAATGCTGAAGTAGAACATAATAGCACGGGGCTTGGATTTGAGAAGGAGACAACATATGATCAAATAAAATAACTATTATTGGAAGTCAAATAAAGGAGGCACACAATATAGCTTAGTGTTTCACACTTCGCGTGAGGAAACTAGCTTTTCACCGTCAATTGCTCATGTCCAGATTCCTCGAATGACAACATGACATCCCTGGCTGAACAGAGGCGCCAGATATCTCAGAGGTCACATTCTGCAGCCTTTGTGTGCATGTTCCTTCTATCCTATCAGCTGACAGAGGTCTCTATCTGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306310 lncRNA downstream 32445 50333218 ~ 50333431 (-) True G269634
TU306276 lncRNA downstream 42750 50322767 ~ 50323126 (-) True G269603
TU306277 lncRNA downstream 43324 50321491 ~ 50322552 (-) True G269604
TU306305 lncRNA downstream 45677 50318737 ~ 50320199 (-) True G269632
TU306309 lncRNA downstream 47272 50318073 ~ 50318604 (-) True G269633
TU306346 lncRNA upstream 6417 50378443 ~ 50380183 (-) False pde11a
TU306354 lncRNA upstream 16872 50388898 ~ 50389175 (-) True G269663
TU306355 lncRNA upstream 17170 50389196 ~ 50389424 (-) True G269664
TU306356 lncRNA upstream 17736 50389762 ~ 50389999 (-) True G269665
TU306358 lncRNA upstream 20224 50392250 ~ 50393020 (-) True G269667
XM_021597223.2 mRNA downstream 32970 50325109 ~ 50332906 (-) True nfe2l2a
XM_036974459.1 mRNA downstream 241256 50119669 ~ 50124620 (-) True evx2
XM_036974455.1 mRNA downstream 266179 50084100 ~ 50099697 (-) True lnpa
XM_036974456.1 mRNA downstream 266189 50084100 ~ 50099687 (-) False lnpa
XM_036974458.1 mRNA downstream 266325 50084100 ~ 50099551 (-) False lnpa
XM_021597227.2 mRNA upstream 6374 50378400 ~ 50436074 (-) False pde11a
XM_021597228.2 mRNA upstream 68175 50440201 ~ 50442930 (-) False LOC110520139
XM_021597239.2 mRNA upstream 148239 50520265 ~ 50525331 (-) True prkra
XM_021597241.2 mRNA upstream 162053 50534079 ~ 50542111 (-) False LOC110520142
XM_021597240.2 mRNA upstream 162053 50534079 ~ 50542288 (-) False LOC110520142
TU305117 other downstream 464338 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 494231 49867217 ~ 49871645 (-) True LOC110520119
TU304905 other downstream 798402 49563848 ~ 49567474 (-) True LOC110520112
TU304903 other downstream 799887 49563848 ~ 49565989 (-) False LOC110520112
TU304858 other downstream 862905 49502416 ~ 49502971 (-) True LOC118944672
TU306341 other upstream 68179 50440205 ~ 50442872 (-) True LOC110520139
TU306786 other upstream 756414 51128440 ~ 51129310 (-) True LOC110520160
TU307414 other upstream 1101298 51473324 ~ 51474139 (-) True fgf9
TU307458 other upstream 1225373 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 1225909 51597935 ~ 51600230 (-) True il1rl1

Expression Profile