RNA id: TU305638



Basic Information


Item Value
RNA id TU305638
length 241
lncRNA type intronic
GC content 0.39
exon number 1
gene id G269003
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50399264 ~ 50399504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atacaacatTTGCTTGTGATCAGGGATGTATTCATTccaccaattctgttgaaaaacttttcctaaatggaagcaaacggaacgaaacggggataaacatacctgaatttgtccaatataaactcttgtttgcaactgttggactaatgattacaccccagatcagctagatgcaggcaagagtgtgcaacaGCACTGACTGCCAATGGTCTATAACTTCTCacatagcctaacataatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305633 lncRNA upstream 7565 50391372 ~ 50391699 (+) True G268998
TU305632 lncRNA upstream 9107 50389946 ~ 50390157 (+) True G268997
TU305629 lncRNA upstream 11871 50387170 ~ 50387393 (+) True G268994
TU305621 lncRNA upstream 28989 50369951 ~ 50370275 (+) True G268987
TU305607 lncRNA upstream 62924 50334644 ~ 50336340 (+) False LOC110520136
TU305641 lncRNA downstream 4923 50404427 ~ 50404724 (+) True G269006
TU305644 lncRNA downstream 9352 50408856 ~ 50409067 (+) True G269009
TU305669 lncRNA downstream 10519 50410023 ~ 50410250 (+) True G269019
TU305672 lncRNA downstream 15834 50415338 ~ 50415543 (+) True G269022
TU305623 lncRNA downstream 40699 50440203 ~ 50441235 (+) False G268989
XM_036974477.1 mRNA upstream 22174 50338169 ~ 50377090 (+) True agps
XM_036974478.1 mRNA upstream 32072 50338167 ~ 50367192 (+) False agps
XR_002472946.2 mRNA upstream 63356 50334300 ~ 50335908 (+) False LOC110520136
XM_021597222.2 mRNA upstream 77970 50316070 ~ 50321294 (+) True LOC110520134
XM_021597221.2 mRNA upstream 79063 50316070 ~ 50320201 (+) False LOC110520134
XM_021597229.2 mRNA downstream 55535 50455039 ~ 50519865 (+) False osbpl6
XM_021597234.2 mRNA downstream 55535 50455039 ~ 50519865 (+) False osbpl6
XM_021597235.2 mRNA downstream 55535 50455039 ~ 50519865 (+) False osbpl6
XM_036974479.1 mRNA downstream 55535 50455039 ~ 50519865 (+) False osbpl6
XM_036974481.1 mRNA downstream 55535 50455039 ~ 50519865 (+) False osbpl6
TU305367 other upstream 216238 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 543762 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 843426 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 886789 49510803 ~ 49512475 (+) True G267358
TU300305 other upstream 3567060 46831008 ~ 46832204 (+) True LOC110520046
TU305730 other downstream 202798 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 499085 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1174476 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2767448 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2821923 53221427 ~ 53223265 (+) True LOC110520187

Expression Profile