RNA id: TU305669



Basic Information


Item Value
RNA id TU305669
length 228
lncRNA type intronic
GC content 0.49
exon number 1
gene id G269019
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50410023 ~ 50410250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagaaaaggagagtgggagagaggaaaccaggacagagaggaaagagtagaagagaagagaaaaggagagtgggagagaggaaaccaggacagagaggaaagagaagaagggaagagaagagaaaaggagagtgggagagaggaaaccaggacagagaggaaagagtagaagagaaagggagagtgggagagaggaaacCAGGAAAGAGAAGacgggaagagaagaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU305644 lncRNA upstream 956 50408856 ~ 50409067 (+) True G269009
TU305641 lncRNA upstream 5299 50404427 ~ 50404724 (+) True G269006
TU305638 lncRNA upstream 10519 50399264 ~ 50399504 (+) True G269003
TU305633 lncRNA upstream 18324 50391372 ~ 50391699 (+) True G268998
TU305632 lncRNA upstream 19866 50389946 ~ 50390157 (+) True G268997
TU305672 lncRNA downstream 5088 50415338 ~ 50415543 (+) True G269022
TU305623 lncRNA downstream 29953 50440203 ~ 50441235 (+) False G268989
TU305624 lncRNA downstream 29953 50440203 ~ 50443011 (+) True G268989
TU305736 lncRNA downstream 117288 50527538 ~ 50530940 (+) True G269085
TU305784 lncRNA downstream 234743 50644993 ~ 50645192 (+) True G269126
XM_036974477.1 mRNA upstream 32933 50338169 ~ 50377090 (+) True agps
XM_036974478.1 mRNA upstream 42831 50338167 ~ 50367192 (+) False agps
XR_002472946.2 mRNA upstream 74115 50334300 ~ 50335908 (+) False LOC110520136
XM_021597222.2 mRNA upstream 88729 50316070 ~ 50321294 (+) True LOC110520134
XM_021597221.2 mRNA upstream 89822 50316070 ~ 50320201 (+) False LOC110520134
XM_021597229.2 mRNA downstream 44789 50455039 ~ 50519865 (+) False osbpl6
XM_021597234.2 mRNA downstream 44789 50455039 ~ 50519865 (+) False osbpl6
XM_021597235.2 mRNA downstream 44789 50455039 ~ 50519865 (+) False osbpl6
XM_036974479.1 mRNA downstream 44789 50455039 ~ 50519865 (+) False osbpl6
XM_036974481.1 mRNA downstream 44789 50455039 ~ 50519865 (+) False osbpl6
TU305367 other upstream 226997 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 554521 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 854185 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 897548 49510803 ~ 49512475 (+) True G267358
TU300305 other upstream 3577819 46831008 ~ 46832204 (+) True LOC110520046
TU305730 other downstream 192052 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 488339 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1163730 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2756702 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2811177 53221427 ~ 53223265 (+) True LOC110520187

Expression Profile