RNA id: TU305889


Basic Information

Item Value
RNA id TU305889
length 1213
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G269224
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50788800 ~ 50790055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTATTGCTTTCATTTCCAAAGCGCTCTCTGGTGTCTGGGAAAACACAGCATTCCCTCAATAAGGAAAACCAAAGTTTTCCCTCTCTGTCATATGCATATATCCATTTAATTTAGACTTGTAAAGGTCTCTTTACATATGGGAGGCAGCCTAGTCCAACAAGGGCAATGGTGCTTGGAACTGAAAGTTTAGATTTTGTTTCACACATATTCTTTAAAGCTTTCCATTACAGTTTCCTTCATAATACACAGATTATGAACATCTCACATTTCTCACACAATTGAGGGTGGAATATAATAGTCTTCAGAACACCCTCTGAAGTATCCTCACAACAAAGCATAACAGGAATATTCACTTCACTTGAATAATGGCGTTAGTGGTGATGGTAACTACCCTGATAGCTTTATAAGTAGTTCTAGAGTTAAGTCGATGATACAACAAAATATTCTGATATCTTACTTATCACAAGGTCTCTCACTGTCCAGAGACATCTTATTAAAAGAAAAATGGAATTTAATgtgactttttttttctttttttcttacaACACATTTCAAGTCTCCTCACCACCAATGTAGTAAAATTGCATTAAAAGTGTAGGAAAATGGTTAAACTGTTTGGCACTTttttattatcatttttttcattattattttcCCCCATAAAGTAAACAAGGAGACAAAAATCTTGAGGatgcAGAATCTCTGTATCAACATGTTCCCACCATAAAAACAATCCAATGACAGAATGTGAAACCAGAAGTACAGTAAGTGATTCAGCCCGTTAGAAAACAGTATAAAATGGCATCCTACAAAAAGAGGTTCAGAGCTGAGTAAAAATGCTGAAAATGCAGTCTCTGATGCAGTCTAAACCAGCGGACATGTCACCATTAAAGCATTAAAAAGCACCAAGATTGTGCATGGACACTGCTCAATGTACATATGTCCCAGATATGTGTAGAAAAGGAAATCAAGAGTGTCCAGAGAAGTGAAGTGAATGTGGCGCCAGAGGGGCTCTGCTTCAGCTTGCTGCTTGGGGAGTTGTAGTGTGATGAGAGGCTAGATGTGGCCAGACCCTATGGGAGATTTGTGGTAGGGAGAAGAGgcatggagacagggagagagcccTTGCTCTTTGGATCAGTACGGATGGGGCTCTTTCCGGCTCAGAATGCGGGTGCTGCTGGCAGAGACGGTGGCACTGCGAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305885 lncRNA upstream 542 50787753 ~ 50788258 (+) False G269223
TU305886 lncRNA upstream 639 50787753 ~ 50788161 (+) False G269223
TU305888 lncRNA upstream 698 50787571 ~ 50788102 (+) False G269223
TU305887 lncRNA upstream 698 50787753 ~ 50788102 (+) True G269223
TU305784 lncRNA upstream 143608 50644993 ~ 50645192 (+) True G269126
TU305896 lncRNA downstream 14535 50804590 ~ 50809753 (+) True G269231
TU305946 lncRNA downstream 85234 50875289 ~ 50875499 (+) True G269279
TU305956 lncRNA downstream 103081 50893136 ~ 50893372 (+) True G269289
TU305957 lncRNA downstream 104232 50894287 ~ 50894921 (+) True G269290
TU306001 lncRNA downstream 169443 50959498 ~ 50959805 (+) True G269334
XM_021597249.2 mRNA upstream 170039 50601983 ~ 50618761 (+) False LOC110520146
XM_021597281.2 mRNA downstream 167959 50958014 ~ 50959445 (+) True LOC110520157
XM_036974548.1 mRNA downstream 275119 51065174 ~ 51110275 (+) False uggt2
XM_036974549.1 mRNA downstream 275119 51065174 ~ 51110275 (+) False uggt2
XM_036974550.1 mRNA downstream 275119 51065174 ~ 51110275 (+) False uggt2
XM_036974551.1 mRNA downstream 275119 51065174 ~ 51110275 (+) True uggt2
TU305730 other upstream 183984 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 605774 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 933298 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1232962 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 1276325 49510803 ~ 49512475 (+) True G267358
TU305958 other downstream 108534 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 783925 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2376897 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2431372 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2501275 53291330 ~ 53336526 (+) False LOC110520190

Expression Profile