RNA id: TU305896


Basic Information

Item Value
RNA id TU305896
length 4905
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G269231
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50804590 ~ 50809753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACAACCGTATACAAGGTTAAAAAGTGTAGAAAGTCTCCCGGGAAAAAGAGAAGATCCGGTAAAATCAGTATCAGAGCCCAGTGAGTGTCAAAGCAACATCAACACGAGACCGTAGCAAACAGTGTGTGACGTGAAGTGAGTAaagagagcgagtgagtgagagaaagagggaaagagaaacaaGTCAAGTTGGAATTTACAACATGCATATTCTGGGACTTGTCTAATAGTACCTGTAGAGGTCACAGTGCACAAAGAGCTTCCCAGAATAATCTCTCTATTGCAGTATTACTACGGATACCACTTTGCTAATACTTCATTAAGACAGTCAGTTGCTTTAGAGGGAGCATACCGATTGTACACTCCCAGCTATATTATACAAATCAATTGTGTCAATCGTAGGAGCAGCACAATCTGCAGAAGAAGCATTTTGTCTCCCACGCGTTGTAAAATTGAACTTAAATCAAATGTTTAATGGGTGAGCAGTAATCATCGTAACGTAATGCACATTGTCGTCTCAGATGGATCAAATTACACCTCGCTGCTGAAAGTGCTACTGGCTTGTCTGATGTGAGTGATATCTGCCTGGTGAAATGTTACAGCAGGTAGGAGTGAGGTGAGGGTACATACATCGTGAAACAGCCAGGGCAAGAAAGCATCAACATCATGCCTGAGCCCTGGGTTAGCTTCTTGGACATGCAATGGAACCAAGCGCGGTCGagactagcacacacacacaagcctggcCTATAGAGCCATGAGTTTAAGCCTGGCACACaatatattactatattatattactatagagTAGGTGTAGTGAATGTGTTGGTATCGAATACAAATCATGATCCGAAATATCAGCCGTGTGCAACAGCCCAACGCCACAGAGCCATAAGACAGTGCTTGGTGTACCTGACAGGGTTCTCCTTGCCTGCAGTGATCCAGCGACCAGCACTACTCTCACACTGTTCCCTCTCACACTTAACCTGGAAGTCATCAATGAGTCAGGTAAAAACAACATTGTGTTATTATTTACAGTTTATATTAATTTTGGACCATGTTAATAAATAGGACCAATATCATAAAACGACACGATAGACAATAAATACTCTGTACACGTGGATAAAGCCCAAGCCTAGAAGAGTCTCAAAGATCCTAGACTAGCAGAAGCCCGTGGCATTGACGGATGAGCTGAGAGATTGAGACGCTGCCCTTAAATTGCCTTTCAGACACATAACATGCAGCACATACTGAAACCTGCCTCCGTGTTCCCAGCGTATTCCCTGGTTCCTGTCATCCTGAACAGAGTCATTTCTCAACTCCCCAGTCCTACATTCTAGTCCTCTGTACTCTCTGCTGACAGTCACCAGGACCACTGCAGTAAAGGAGACCCAGTTTAACCCCTTTTCTCGTCACACAGTCAGTTACAGAACAGCAAGacatcaggacagtacaggaACAGGTTCACATGCTTTCAGAGCAGGGAAATAGAGACAAGGTGAGATTTAACCCTTTAAGTGTTGCATGCTGACAGAACAGAAGTGTTTCAAATTGGACAAGGAAATtcgggaaaaataaataaaaaaattaaaagcatTATAAGGTCAATAAATCCTTAATCAAAATTATACACTGCAAACAAATGACAAGGAGAATGAAgcaaaaagcaaaaaaaaaaaattggggacagcaagaaaacaaataaaacacaAAAGTGCAGAGTAATTTTGTtagggaaaaatggctacctttGCAATGCTGGAGGAAAAGAACAAATCAGTGAGATAAGTATACCCCTGGAGTTCGCTGAACAATAGAGAATGAACGCTTACAAGAGATGTTTAGGTAGACAAGGAGAAGAAGAGATGCCAACAGTGGGCATCAGAGCCATATTATACCACCAACACCtgaggtctcacacacacacacactctcttaggTCTAATAAAACATGCCTAAAACCCACAGAGAATTGCTTTTCTGGACAACTAGTACTAGCACTGTCCAGTAGTACTAAGTGGGTATGGATATCTGCTGGTATGACAAGTCTTAAAAATAACGTTCCTTCGTTAAAACGGATGTTCGCCAGAACAAACTACGTCTATGAAAAATTGTGGCTCtgtttgcatatatatatatatatatatatatagtcaacagtagttaGCTGAATTTCAATCCGTTGAGTATTTGTACAGAACACAGGGTTACTGTAAACATAGTGAATATGAAATGAGGAGTTGGGACGTGCTGCAGGCGAACTGGAAGCTTTCTCAGCACCAAACAAAGACATGACCGACTTCTCTCACTACGGACACCAATTAGATATCGACCGCATGTACAGTACAAGCAAAACCCACGTCTATAGTCAATACTATTGTGCCCTCCTAAGCAACTCCCTAAATATCAACAATTAATCAGACATAGAACATTAACACAGAACATTACAAGgaaactgcctgtctgtctcctctattTCTAGGCACAGTATACTCAACACGAACCAATCCATCACAAAAGTCTACAGATACGATCATAACGATTACAAAAGCAATACAAGTGCATATACAGTACCGTATAAAACGTAAACCAACTCCCCCATCGACATGCTATCAAACAACAACATATTGTCAATTTACAGAATGGATGTTATATCAGCGATGGGCGACTCCAGTCCTTGGGCGGGAGTGATGTCACACTTTtctccccatccctagcaaaacacagctgattcaactaattgcgttctaaactgaagatcatgattagttgattattggagtcaggtgtgtcagctggggctggggcaaaactgttacaccaatcaggccccccgaggactggagttgcccgcCCCTGTGTTATATGAAGACACAAGACGGCATTAGACAGAGCATTGGAACCCTCCGACAATCAATAAACCCTACAATGCATCATCGTAGACGGAGTGTGAAAAGATAATTCCCTCGACTACATCCCAAACATTCAGCTACAGAGCATCAGGGTGTTTGAAACCCTCACCGACCACTGCATTTCATCCATGCAGTGTTTGTTCAAAGGACTTGGCACTAGAAAACGATAATCTCTCTAATTCAGAACCACCTGGTGTGTGCAGACACCAATACAATCCGAGAAGACATGAAAGGTTAACCCCCTAAGGgtagaagagaacagagagagccttcatccctctctccctcagttaaaGGGCAGAGCGACCCAATGGGAAACAGAGTGTCAGGCTGGCTCATGGTTGAGCGTACTCTACTGTATGCTCAGCACAGCGACAGAGGAGTGTGAAGGGGGTTAGTAGCGCCTTGTCTTAAACCCTCCTAAGCAACATCTGTCCCTCCACACAAACTGGCATAGCTATCACCATCTACCACGCTAACCATCCCATCTTCTCTCAGACCCAACGCTACCCTACCCTGCCTATAGGGCAGGTCTCTGGACTTCTTTTCTCAAGGCTAGCCTAACAGCTGAACACTTGAGCCCCATCCTCGTCACTAAAATTAAGGCAGCCATCTTCCTCCAACTCCTCATCCAGCTGGAGGCTACCGAAGGAGTATTTGTTCCTGGGCATGGGGGAGGAGTTGACCCCCATGGCCATGGGGTTACCATAGGTCAGCGGGTGGCTGCTGGAGCTGCCCGTGGTGGTCTCGGTCTCCGAGTCACTGGACTCAGTGCCACTGCTGGTGGAGCCGTCAATCATCTGAACAGCCCCTATGTGGTCTACGCCACCCCGGCTGTACAGCTTCTGTAAGGGGCTGGGCTTGGGCTGGCCGGGGGCAGACAGGCCATTGGCCATCATACGGCGCTCCAGAGCAGCCATGCGCTCGTTGCGGGAGACGACAGGTCGGGGATCGTGGGAGGGCGTGGAGGTGGCCTGCTGCGGGCTCAGGACGAAGGGGTCAGTGTCGGAACGGTTACGCATGTTGTGGAGCTTCTGTAAGTGTGGCGAGCGGGCCACGATGGGTGAGTAGCTGCCGTAGTTTGGCGGGGCCTGGCCCTCATCTCGGGGCCCCCCAGGGCCCCCCCGGGCGTTAAAGCCCCCGTGACCCGGTTCGTCCCAGCGCGGGAGCCGGGAGCCGTAGCCGTTCTGATCGGCGTGGCTGAGCGAACCTGTCCGGTGGAAGCTGCTCATAACGGGGCTTGACGTGGTGCTCTTAGAGCCTAACATATGGCGGACTGTCAGGGGGCTGCTGCTACGCTGATCCCCAATACCACGACCCCCCAAATCCTCCATCATAGTACTATGGAGAGGGCCACGTGGCGGACCCCCGCCGAAGAACGACAGGTTTCCCGACTCATCTAATGCACGGCTCATATTGAGGGGGGGTTTTGGGGAGGGAGGGGTCTCCATGTACCTCATCCTACCCAGAGCGATTTCTCGCTCGTTTATACTGCCACGGCGGGGGCCCGCCACCTCCTCCCCATAGCTCTCATTAGGGTGAGACCTGGTAACCCGGCCCTTGGCCACGTCGTATTCACTATCTATATCACTGCAGTCAATGTAGGGGATGGAGGAGCTGCTGCCCTTAGCGCCCCGGGAGGCTGGACCTGTGTTCAGATGTTCTGGGTGGGGCTGCCTGGCTGGGCCTGGTTCTGCCCCGGGGCCTGGCCTTTCCTCGCTGTGTGCCCCATTCCTCTGGCTGGAGGGGCTGCTTCTGGTCCGCAGGGCCGATGGGTCTTCGGCGCTCACCAACACGGACTCCTTCCAGTGACGGCGTGGCGGAGAGTCCACTATGTCTCCTGGAGCACGGCTCACACTTCTTTTGGCACTTGAGGGCGGTGCGGGGAAGGCAGTGGAGACAGACGGCTGCTGCTGTGCTGGACCCGGCTGTGTTTCCTGAAGAGGAGACAGGGTGACAGAAAGTGAACATGTTATACAGCAAACCTTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305889 lncRNA upstream 14535 50788800 ~ 50790055 (+) True G269224
TU305885 lncRNA upstream 16332 50787753 ~ 50788258 (+) False G269223
TU305886 lncRNA upstream 16429 50787753 ~ 50788161 (+) False G269223
TU305888 lncRNA upstream 16488 50787571 ~ 50788102 (+) False G269223
TU305887 lncRNA upstream 16488 50787753 ~ 50788102 (+) True G269223
TU305946 lncRNA downstream 65536 50875289 ~ 50875499 (+) True G269279
TU305956 lncRNA downstream 83383 50893136 ~ 50893372 (+) True G269289
TU305957 lncRNA downstream 84534 50894287 ~ 50894921 (+) True G269290
TU306001 lncRNA downstream 149745 50959498 ~ 50959805 (+) True G269334
TU306006 lncRNA downstream 150239 50959992 ~ 50964940 (+) True G269336
XM_021597249.2 mRNA upstream 185829 50601983 ~ 50618761 (+) False LOC110520146
XM_021597281.2 mRNA downstream 148261 50958014 ~ 50959445 (+) True LOC110520157
XM_036974548.1 mRNA downstream 255421 51065174 ~ 51110275 (+) False uggt2
XM_036974549.1 mRNA downstream 255421 51065174 ~ 51110275 (+) False uggt2
XM_036974550.1 mRNA downstream 255421 51065174 ~ 51110275 (+) False uggt2
XM_036974551.1 mRNA downstream 255421 51065174 ~ 51110275 (+) True uggt2
TU305730 other upstream 199774 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 621564 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 949088 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1248752 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 1292115 49510803 ~ 49512475 (+) True G267358
TU305958 other downstream 88836 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 764227 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2357199 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2411674 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2481577 53291330 ~ 53336526 (+) False LOC110520190

Expression Profile