RNA id: TU306006


Basic Information

Item Value
RNA id TU306006
length 4949
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G269336
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50959992 ~ 50964940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAACACATTCATCATTAATAAGATCCTCAATCCTCTTTCTGAatggccctagaggcaccagaacatcacatttaaGAACAGAGAAGACTTACAATATTGGACTCAAATATTGTCTCAAAACATTGGACTGAGGATAGAACACTCTCATCTATGATCTAGCTAGAGAGTCATAGATTTAATAAGAATATCAGACTTCGCTGCAGGTGATTGCTTAGAACAGATGTGAACCTTTTCCTTTCATACGGCTGGCACTCGAGTGGGGCACGATTAGTAGAAAAGCTCAGAGCTTTCacaatagaataataataatcagtTATTTAGGgaagaaatacagtatatatgtacgACAATGGGTTTTACATGACATTATATCCTGATAGTGTAACGATCCGTTTGTGGAGGTGGACAACTGTTTGTTCACATCAGCCAACAGTAAAAAATCAACAGTGATTTCACATTTCACTAAAGGTGCCTGTCTGTAGACAATAATAATCCAGACATCTGAACTTCCTCAAACAAACCCAGTAGGATTGGTACCACAAAGCAGGAGCATATAAAATAATACAGTACATTTTATGGTACCTGTCTGAGAAGCTATTCTCCTTGTTTGTGGGTATGagtcattttccttcctcatacCACAGCTAGGAGGAAATAAGCGGGATCTGTCGGGAGTAGACTAGACAgtagagtctgtctgtctgtctgtctggtggttCCTGTCTGGTGGTTCCACTTTTTTTTGCAATAAAATGAATGAGCTTTTTGAAAGAAGATGAGTCTTCATTCATTCAACTTATTAACTGCACCATGTTGAGAGTCAGGGCAATTTCCTGCATAGAGAGAAGCTTGTATTAGGCAGGTAATAGTCCAATTAGTGTCTTGTAAGCAGACCAATATGTCCTTCCCTTGTCACTGCTGAATAACAGCAAATGAAAGAGACTGATGATTGTACAGTGCATATACCTGTATATATAAACTGCTATTTCTGGACCAGAACATTCTGAATTATTCTCCCTGGTTCCCTTATTTCTCCCTTAGTAATAATCTCACTATAGCAACAGGAAAGGAACTTGAATATTTCCATTAACAACTAGTGTTATTCTCAATGGTCCTCTCCTTTCTACCTAATGTTCGTGTTTTACAATGCATATAATATATCTCACTGAAATGTAATCctcaggagacagacacacacatgaagTGAAACACATCCACTATACCACACTTCGTTATGATGCACGGTTATGAAAATATTGATGGAGAAAATACAGGCCAAAATCTTGCAAACACAACCAATGCTAATAATTCACGCAAACAAGTTTAATTTCGACAGTGCATGACCTACCGATGAAGATAGATGTTGGACGCCTGGTCACCTGACCTGGGACGGTGTTTATCTGGGCTGTTTGCTAACACGGACGAAGCTAGTGCTTGTATTGCATTTTAAAGGTCAAGGACCTCATGAATGCGGTTAAGTGTCGCTGGATAACTTTCCTAACGTCTATGGCTTCATGCCAATGATTCCAGGCAGAAAAGGGTCATGTTTGTTCAATGCATTTATTTTCTAATATCTGAAGTAGTATTCACCCAGCCTTGCAGAACCTGACAAGAACATTGCTGATAAAGTATAAGACATCAAATGGCATCAAGACTGTCCTTTTCATACACAACAATTTGAACAGGAACATACAGATACGTACATGTAGAAAGTTCTCCCTCGTGTGATGGTATTATAACCTTTTTCCTTTCAGACAAGCTCTCTTGTTTGCAATAAATAAATGCAAGATGACCTGTTTTTCAAAGATGTGCACTTAAGTTGAGTGGCAGTTGAAGTTCATTCAAATCCCTCTTTCACAACATGTCATGTCACAGGGCTTTGGGGATGGCAGGACAATATCTAGTGTGACACTCTCTTTTTAGGCTTGATTTCATGGCTGTATTTACACTGAGGCCTGATAAGGATAATAGGTTTGAAATAGTCATTTCAGACTTTTcagatgttgcgtcaatatacACATCACACTACCGTAAGTTTGAGCAGATAACAACTACATGAATATAAGCAGTTTTTTTCATCAGGGAGATTGCTTCACAGCACATTCCACATTCCCCCCAAAATAAAACTTGGTATTGTATCCATAATGTTGGTTTGAAAATGCTGGGGCAATGTATAAACATGGTGTGTTGGCTCACTGAAATTGCAGGCAAACTTGTGATCAATATACAATAAtggtacgcacgcacacacactccaatAATTGTATAGCTTGAACAATcacttaaaacaaaaacaaaaaacagtttCCTGCAAACAGATGCTGCATATTCCTGAATGAAAAATAATTTTCAATAGAGCTTTTCCATTTAGCAGGTTTTTTAGTCCAAGAGCAGGCCTAATCTGGATTAGGGATACCAACTCAAACTGTGATAATGGTTACTATTACATCACAGTCAATCAACTAACTGGATACAAACTAACTTAAACAACAAAAACTTCCACTCATCGGTTAAGGTTAATGGACCAAAGCTGTGCTCAGTGATCAGACAGACCTACATCTTCTGAAAAAATCAAGTAAAAACAGGATAAATGTGAAAATGAAAGCAGCAGCAAATTcatatttttataaaaaaaatattgtcattGGAGAGTTGAAATGttcacaacagaacaacagatcaGAATAGCAAATCCATGATTTAATCtaacatgacatcatcatcacaGCCATCTGCAAGTCATTCAACCGTTACAATTAGATGAATCTCGTTTGATACGTTCAAGTTTGTTTAATGTTCATTCAGAAGTTACCTGTGTTTTGAGGGGGACAATCAGACATGAAACTAGATGTGGTACATTTCATCTCCTTCCTACTACAGGAAACGACTGTATTCTGCTACCGTGTCATCTCAGGCTGTTATTCTGGTAGCATTTAGAACCCCCCTCGCAGCCCACAAAGCCGTTGGCGTGGGCTCCACAAACATGTTAAGCCACGGAGTGTGACGGGGTGAGCACGAGGGCCGAATGCTGATCACCTCATTGACAGTCAGTCCACACACCAACCACACTGACCTGGCTCCTCAGCCCTCACCTAGAGCATTTACCTAGTGGTTATCTTTACCTTCTGGAGAAGACTACTTAAACAATCCAAGCTTAACATTTTTGAAAAATCTTCCTTGAGGAGTTCTTTCCATTTGTAATGTGAAAGCTGAATGTGGTAAGTCTGGTCAGTGCAGAATAGAAATCAGGCTGGTTTTCTTCAGGGTAATCCTCTCTTTGTGAGTTTATGATTGACTTCACATTCCAACACACAGATAGTGGATGAACAGAAACAGCAGTTCCTCCGAGTTGAAACTTGAAAGGTGTTGCATGTAGACAAACTCTACTGAATATTGCACCCTAGAAAACATTTTTGCATCATAATCAAAACATCTGACATTATCTTGACTGACTACAGCTACACTATATTTGTGTGAGGGAAATGTCAATATAATTGAAACTGCCATGATAAAATGAAACTAAATACATTATCTTATTTCTGAGAAGTTGTCCATTTGCAAGGTCCCATTAAGAAAACAGTAGCTACGTAAACAAAGACAAATATTTTCTAAGTCGGTGTACTTTGGCTCTCATCATTTCTTTTGGAAGTAACTCTCCATCCTCAAACCGTCTCTCAGATATAATATGGACACATGACATGCGAGAATCAGCACTTTTATATTGTTTTCTGTTGAACTACTATATTCCTGCCAGTCGCAACAAAAAAACACGGATTGATATCCACCCCTTGACATTGAGTcccaataaaaatgtatttgctaGCAGCGTCTTTTGATTGTGTCTTCTTTCAGCTTAACTTACTGCCTTTAAAGAGTTATCATAATCTACATGATAATAAATAACCATGACTAAGAGGCAGGAAAGCAACGGAGCAGCAAAACAAttcattacaaataaatacattaaaccATCCATTTGAAGATCTAAGACACCAAAGGGCACTCCAAGGCAGAGCTTCTGTGATACTGACTCACAGACTTGGCAGTTTCATAACCAGAAAGAAACTTTAGCAGAGCGCTAGGATCACACTGAAGCTgagaaagagataaagatagagaTAGTAGACAGAAAAAgatagagcgatagagagagattgacagaggcagagagagaaagagtaccaTGTGAAATGATTCTGGAGGTGATCACCAGtgacctctctctgtgtgcgtggcCAGGGTAAGACCTCACCAGCGGGCCACCTGGCTGGTGTAGTCTTCAGTGGTCGTGGCCAGGTCGCCTCCGCCCCCGTACCCCCGGCGTCTGGGGAGTGAGGCCCTGCTCTGCTCCCTCTGCTCCCGAAGCCATCGGCGCTCCTCACGCCTCTTCAATCGCTCCGCCTGGTGCTCGCGCTGGCGGGTGTATTGGAAGCGCTGGAGGAACAGGTCCTTGGCATACTCGTACAGCTGCACGTCCAGATAGTTGAGCTCCTCGATGCGACGGCGCACAGCCTCACTCAGGTCCACGTTGGCGGCGCGCGTGCTGTTGATCTGAGTGAAGGCGGCGATGAAGCGCAGGCTGAACGTCCGCTCAAACAGGTACTGCGTCTTGCGCTGGAACTCTGTCAGTCCGTAGAAGGCCATGTTCTTCAGGTTGTTCATGGCGCTGCCCAGCAGGATGTGGTTGCGATCGCTCTCGTTCATGGAGGACAGGTTGTAGCAGCCTACCAGGTTGAGGTCGGCCAGCATGCGCACCTGTCGGTTGTTGGCCAGGTTGGACGGGCAGTCCATGAACTCGGTTAGGGTGACGCCCGACCAGTCGTCCCCGCTGTAGCAGGTGGGCAGTTCGTCCTGTGTGGGCGAGCGCCCGTCACACATGTGCAGGGAGGTCTTCCAGGTGGCACCTCGCTGCACGTGCTTCCACTCGCTCAGGTAGCGGGAGACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306001 lncRNA upstream 187 50959498 ~ 50959805 (+) True G269334
TU305957 lncRNA upstream 65071 50894287 ~ 50894921 (+) True G269290
TU305956 lncRNA upstream 66620 50893136 ~ 50893372 (+) True G269289
TU305946 lncRNA upstream 84493 50875289 ~ 50875499 (+) True G269279
TU305896 lncRNA upstream 150239 50804590 ~ 50809753 (+) True G269231
TU306026 lncRNA downstream 19681 50984621 ~ 50985007 (+) True G269356
TU306035 lncRNA downstream 29671 50994611 ~ 50995038 (+) True G269365
TU306036 lncRNA downstream 31147 50996087 ~ 50996330 (+) True G269366
TU306044 lncRNA downstream 41302 51006242 ~ 51006553 (+) True G269374
TU306048 lncRNA downstream 45815 51010755 ~ 51011018 (+) True G269378
XM_021597281.2 mRNA upstream 547 50958014 ~ 50959445 (+) True LOC110520157
XM_021597250.2 mRNA upstream 341231 50601983 ~ 50618761 (+) False LOC110520146
XM_036974548.1 mRNA downstream 100234 51065174 ~ 51110275 (+) False uggt2
XM_036974549.1 mRNA downstream 100234 51065174 ~ 51110275 (+) False uggt2
XM_036974550.1 mRNA downstream 100234 51065174 ~ 51110275 (+) False uggt2
XM_036974551.1 mRNA downstream 100234 51065174 ~ 51110275 (+) True uggt2
XR_002472950.2 mRNA downstream 183604 51148544 ~ 51193321 (+) False LOC110520162
TU305958 other upstream 59715 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 355176 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 776966 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 1104490 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 1404154 49554498 ~ 49555838 (+) True G267381
TU307177 other downstream 609040 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2202012 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 2256487 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 2326390 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 2683885 53648825 ~ 53652431 (+) False G272965

Expression Profile