RNA id: TU308746



Basic Information


Item Value
RNA id TU308746
length 459
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G271858
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52607822 ~ 52608280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAATAAACTCAATACTTGGTTCCAACAACAATAAACTCAATACCTTGTTCAAACAAGGTTATTacactattgtttgaggagagtgcataacaacaaaacacttttatcacggcaactggtttgatacattcacctctgaaggtaaataatgtacttacattcagtaatcttgctctgatttgtcatcctgagggtcccagagataaaatgtggcagagttttgtttgataaaatccatttttatattcaaatgtaggaactgggttctacagtttgaacccctgctgtctccACCCCGCCCgtccatctagatgtgtgaaagttagtgtataagctaatgatccatcatgtatgacattcctgggactGTATAAACTTAAATTTTGTATTCCTATATCATTTTTGTATGTtgtctatagttatgtacttgaaaatgtatcaattaacCAAtccggcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU308743 lncRNA upstream 1321 52606274 ~ 52606501 (+) True G271855
TU307712 lncRNA upstream 671424 51932868 ~ 51936398 (+) True G270862
TU307639 lncRNA upstream 754766 51852747 ~ 51853056 (+) True G270795
TU307293 lncRNA upstream 836205 51770610 ~ 51771617 (+) True G270484
TU307295 lncRNA upstream 837692 51769469 ~ 51770130 (+) True G270486
TU308766 lncRNA downstream 12491 52620771 ~ 52621041 (+) True G271878
TU308773 lncRNA downstream 16822 52625102 ~ 52625348 (+) True G271885
TU308788 lncRNA downstream 26815 52635095 ~ 52635354 (+) True G271900
TU308798 lncRNA downstream 31345 52639625 ~ 52639935 (+) True G271910
TU308843 lncRNA downstream 63108 52671388 ~ 52671864 (+) True G271955
XM_021597313.2 mRNA upstream 20774 52585011 ~ 52587048 (+) True LOC110520179
XM_021597312.2 mRNA upstream 40531 52508775 ~ 52567291 (+) True LOC110520178
XM_021597311.2 mRNA upstream 165213 52380931 ~ 52442609 (+) False LOC110520177
XM_036974561.1 mRNA upstream 165213 52405572 ~ 52442609 (+) True LOC110520177
XM_021597302.2 mRNA upstream 840836 51759256 ~ 51766986 (+) True LOC110520174
XM_021597316.2 mRNA downstream 100091 52708371 ~ 52760376 (+) False LOC110520180
XM_021597315.2 mRNA downstream 100119 52708399 ~ 52760376 (+) False LOC110520180
XM_021597318.2 mRNA downstream 101794 52710074 ~ 52760376 (+) False LOC110520180
XM_021597314.2 mRNA downstream 107088 52715368 ~ 52760376 (+) True LOC110520180
XR_005049194.1 mRNA downstream 266648 52874928 ~ 52942773 (+) False LOC110520185
TU307177 other upstream 1029139 51573980 ~ 51578683 (+) False LOC110520169
TU305958 other upstream 1707545 50898589 ~ 50900277 (+) True G269291
TU305730 other upstream 2003006 50602302 ~ 50604816 (+) True LOC110520146
TU305367 other upstream 2424796 50162301 ~ 50183026 (+) True hoxd3a
TU303972 other upstream 2752320 49836617 ~ 49855502 (+) True G267529
TU308945 other downstream 558672 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 613147 53221427 ~ 53223265 (+) True LOC110520187
TU309244 other downstream 683050 53291330 ~ 53336526 (+) False LOC110520190
TU309921 other downstream 1040545 53648825 ~ 53652431 (+) False G272965
TU309923 other downstream 1040545 53648825 ~ 53652152 (+) True G272965

Expression Profile