RNA id: TCONS_00000003


Basic Information

Item Value
RNA id TCONS_00000003
length 590
RNA type processed_transcript
GC content 0.59
exon number 5
gene id XLOC_000001
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11822 ~ 16373 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCGGATTACCGAGTTTAACGGGGCGTGTGGGGTTccgccgtgtgtgtgtgtttgtgtgtttgtgtgtgtaaactcCGTCATTCACTGATCACTGATCCGCTGCTCTCCACACACCTGCGGGAAAGCGTTTATTggcttgGTCCGGGGGTTTTAGACCTGTCGGCTCGGGGTCTGCAGCGGCTGGAGCCTCAGCTGTTCCGCCcggattcacacacacacaccctgatcCTGGATCAGAACCAGCTGATGAAGCTGGAGCACCTGGAGCACAACCCCGACctgcagcagctgtcGGTGGCCTGTAACCGTCTGGTGCGCATGATGAACGTCTGCAGACTCACGCAGCTGCGGGTCCTGGACCTGCAGAATAACAGCATCGGCTGCATCGAGGGCCTGAAGGAGCTGCAGCAGCTGGAGCGCCTCAACCTGGCCGGGAACAACATCAAGGTGATGGAGCAGCTACACCACTGCGTCTCCCTGCAGCACCTCGACCTGTCTGATAATAATATCTCGCAGATCGGAGACGTGTCCAGGCTCTCGGCGCTGCAGacgcTGCTCCTGCACGGAAACATCATCACCACACTGCGC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-031030-11 Orthologous to human CEP97 (centrosomal protein 97).

Ensembl:

ensembl_id ENSDART00000170877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000004 lncRNA downstream 910 14167 ~ 15063 (+) False XLOC_000001
TCONS_00000005 lncRNA downstream 1086 14343 ~ 15063 (+) False XLOC_000001
TCONS_00000007 lncRNA downstream 5459 18716 ~ 19963 (+) False XLOC_000002
TCONS_00003000 lncRNA downstream 5459 18716 ~ 20331 (+) False XLOC_000002
TCONS_00000009 lncRNA downstream 5490 18747 ~ 20331 (+) False XLOC_000002
TCONS_00000006 mRNA downstream 1805 15062 ~ 16272 (+) True XLOC_000001
TCONS_00000008 mRNA downstream 5459 18716 ~ 23389 (+) False XLOC_000002
TCONS_00000010 mRNA downstream 5529 18786 ~ 23173 (+) True XLOC_000002
TCONS_00000011 mRNA downstream 12328 25585 ~ 27255 (+) True XLOC_000003
TCONS_00000012 mRNA downstream 14433 27690 ~ 34330 (+) False XLOC_000004
TCONS_00000036 other downstream 246783 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 500756 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 524332 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 563187 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 1205434 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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