RNA id: TU309376



Basic Information


Item Value
RNA id TU309376
length 663
lncRNA type intronic
GC content 0.40
exon number 1
gene id G272461
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52895397 ~ 52896059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtAGGCCTCTGTTTGAATTAGTATACCTTTTTATAGATAAGTTAAACTGTTGGCAGACACATAAGCATAAATGATAGTTTTGCGTTTGTAATGACGACTCGTCAGAGAGCTTGGTGATGGGTATACATGTCCAAATTCAGCACTGCCATTTCACCACAGAATAGCAAATCAATTAAGGAGGTTTAATATGCTAAAGTTGAATCACTAGTTAGTGATAATATGAAAACCATGCACGAGTTCCTCTCACGTGACCAttgtcttctctttctctctccacagaAGTGTTTGACACAGTCCCTACTTATTTGGCTCTTAATCCATACAAAAACCGTGTTTGTCAGTAAACATGTTGTGTGGACCAGATCCACTATCACAGGGCAGGGTGGGTTGGTTGGACTGGCACTAATACCCTTAGCAAAGCTATCAGCTGAGTAATTTGGGTAATTGCTACGATCGGAAACTGTTTATTTCATTTGCATCCTGTATACTCCAGAGCCCTCTATAACAAAAGAAAACGCCTCATCCTTTTTCCTCAACAATTAGGGTTTCTTCTTCTTGTGCCAGCATCAGCAAATAAAACTTGTTTGCATCAGCAAGTAAAGAGGTTTGTGGTGTTTTATAACTATTGTTATTCACAGGCAGCGTTTTGGACGCAATAATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU309361 lncRNA downstream 16825 52878286 ~ 52878572 (-) True G272446
TU309360 lncRNA downstream 17296 52877758 ~ 52878101 (-) True G272445
TU309332 lncRNA downstream 106169 52789001 ~ 52789228 (-) True G272417
TU309299 lncRNA downstream 118863 52775593 ~ 52776534 (-) True G272384
TU309327 lncRNA downstream 122107 52773086 ~ 52773290 (-) True G272412
TU309378 lncRNA upstream 1873 52897932 ~ 52898246 (-) True G272463
TU309379 lncRNA upstream 2323 52898382 ~ 52898611 (-) True G272464
TU309385 lncRNA upstream 9434 52905493 ~ 52905775 (-) True G272470
TU309406 lncRNA upstream 41372 52937431 ~ 52937699 (-) True G272491
TU309414 lncRNA upstream 52046 52948105 ~ 52948705 (-) True G272499
XM_021597322.2 mRNA downstream 19627 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA downstream 19627 52827783 ~ 52875770 (-) True zeb2a
XM_021597320.2 mRNA downstream 19628 52827783 ~ 52875769 (-) False zeb2a
XM_021597321.2 mRNA downstream 20477 52827783 ~ 52874920 (-) False zeb2a
XM_021597323.2 mRNA downstream 50983 52827783 ~ 52844414 (-) False zeb2a
XM_021597342.2 mRNA upstream 488482 53384541 ~ 53394318 (-) True LOC110520193
XM_021597344.2 mRNA upstream 641618 53537677 ~ 53562438 (-) True LOC110520195
NM_001160552.1 mRNA upstream 765041 53661100 ~ 53663978 (-) True ubxd2
XM_036974578.1 mRNA upstream 775706 53671765 ~ 53746869 (-) True LOC110520198
XM_021597349.2 mRNA upstream 921052 53817111 ~ 53864985 (-) True rab3gap1
TU309282 other downstream 186581 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1295167 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1295499 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1421258 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 1766087 51128440 ~ 51129310 (-) True LOC110520160
TU309646 other upstream 353867 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 1783859 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 2207435 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2514084 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2514084 55410143 ~ 55411487 (-) True G275250

Expression Profile