RNA id: TU309379



Basic Information


Item Value
RNA id TU309379
length 230
lncRNA type intronic
GC content 0.40
exon number 1
gene id G272464
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52898382 ~ 52898611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATACAGTGACTCAAGAGAAGAACGAATTACACGTGTGAAACCATGACCCTTTATACATTCAAAGTGGAATATAATGCGATGTTTCTCCCAATCGAATGATATTAAAATCCAATTAAAGGCCCtcataaaaaaaaatccagagaGGTCAACTCATTCGGTTCAGTGTCATTTCTTGCTGGTGGGGCTCGGGTGTTTGGAGTCGAAATATCCCCTGAGATCAGACATACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU309378 lncRNA downstream 136 52897932 ~ 52898246 (-) True G272463
TU309376 lncRNA downstream 2323 52895397 ~ 52896059 (-) True G272461
TU309361 lncRNA downstream 19810 52878286 ~ 52878572 (-) True G272446
TU309360 lncRNA downstream 20281 52877758 ~ 52878101 (-) True G272445
TU309332 lncRNA downstream 109154 52789001 ~ 52789228 (-) True G272417
TU309385 lncRNA upstream 6882 52905493 ~ 52905775 (-) True G272470
TU309406 lncRNA upstream 38820 52937431 ~ 52937699 (-) True G272491
TU309414 lncRNA upstream 49494 52948105 ~ 52948705 (-) True G272499
TU309424 lncRNA upstream 62954 52961565 ~ 52961791 (-) True G272509
TU309426 lncRNA upstream 66132 52964743 ~ 52964948 (-) True G272511
XM_021597322.2 mRNA downstream 22612 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA downstream 22612 52827783 ~ 52875770 (-) True zeb2a
XM_021597320.2 mRNA downstream 22613 52827783 ~ 52875769 (-) False zeb2a
XM_021597321.2 mRNA downstream 23462 52827783 ~ 52874920 (-) False zeb2a
XM_021597323.2 mRNA downstream 53968 52827783 ~ 52844414 (-) False zeb2a
XM_021597342.2 mRNA upstream 485930 53384541 ~ 53394318 (-) True LOC110520193
XM_021597344.2 mRNA upstream 639066 53537677 ~ 53562438 (-) True LOC110520195
NM_001160552.1 mRNA upstream 762489 53661100 ~ 53663978 (-) True ubxd2
XM_036974578.1 mRNA upstream 773154 53671765 ~ 53746869 (-) True LOC110520198
XM_021597349.2 mRNA upstream 918500 53817111 ~ 53864985 (-) True rab3gap1
TU309282 other downstream 189566 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1298152 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1298484 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1424243 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 1769072 51128440 ~ 51129310 (-) True LOC110520160
TU309646 other upstream 351315 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 1781307 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 2204883 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2511532 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2511532 55410143 ~ 55411487 (-) True G275250

Expression Profile