RNA id: TU309426



Basic Information


Item Value
RNA id TU309426
length 206
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G272511
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 52964743 ~ 52964948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTTAACTCTTCCACTAGTTTATAGGAGGACTAGATAGAGAACTTTAGATGATGTGCCtttgaaatgtattgaaaatgacgATCAGATAAATAGACTGTAAATAATCCCTAAAAAAAAATAGCATTTTCAGGTAATGCTTAGTAATCAAAACCTTTGAATGTATAACACTACTCATCTTATTATAACAGCTGTTGATATTAATTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU309424 lncRNA downstream 2952 52961565 ~ 52961791 (-) True G272509
TU309414 lncRNA downstream 16038 52948105 ~ 52948705 (-) True G272499
TU309406 lncRNA downstream 27044 52937431 ~ 52937699 (-) True G272491
TU309385 lncRNA downstream 58968 52905493 ~ 52905775 (-) True G272470
TU309379 lncRNA downstream 66132 52898382 ~ 52898611 (-) True G272464
TU309473 lncRNA upstream 64538 53029486 ~ 53029746 (-) True G272558
TU309475 lncRNA upstream 66563 53031511 ~ 53031788 (-) True G272560
TU309513 lncRNA upstream 133719 53098667 ~ 53098877 (-) True G272596
TU309530 lncRNA upstream 150020 53114968 ~ 53115301 (-) True G272613
TU309535 lncRNA upstream 152797 53117745 ~ 53118228 (-) True G272618
XM_021597322.2 mRNA downstream 88973 52827783 ~ 52875770 (-) False zeb2a
XM_036974563.1 mRNA downstream 88973 52827783 ~ 52875770 (-) True zeb2a
XM_021597320.2 mRNA downstream 88974 52827783 ~ 52875769 (-) False zeb2a
XM_021597321.2 mRNA downstream 89823 52827783 ~ 52874920 (-) False zeb2a
XM_021597323.2 mRNA downstream 120329 52827783 ~ 52844414 (-) False zeb2a
XM_021597342.2 mRNA upstream 419593 53384541 ~ 53394318 (-) True LOC110520193
XM_021597344.2 mRNA upstream 572729 53537677 ~ 53562438 (-) True LOC110520195
NM_001160552.1 mRNA upstream 696152 53661100 ~ 53663978 (-) True ubxd2
XM_036974578.1 mRNA upstream 706817 53671765 ~ 53746869 (-) True LOC110520198
XM_021597349.2 mRNA upstream 852163 53817111 ~ 53864985 (-) True rab3gap1
TU309282 other downstream 255927 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 1364513 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 1364845 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 1490604 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 1835433 51128440 ~ 51129310 (-) True LOC110520160
TU309646 other upstream 284978 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 1714970 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 2138546 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 2445195 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 2445195 55410143 ~ 55411487 (-) True G275250

Expression Profile