RNA id: TCONS_00029406


Basic Information

Item Value
RNA id TCONS_00029406
length 3127
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_014906
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32571727 ~ 32600868 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCCAGTAATATTATGCTGCGGCATCCCAGGACAATGTGACCCTCCTCGGATCACCTTCATTAGCTAGTTGAAGCGCCTCGGAGTGCGAGTGAGCGCACGGTAGGGCCAAAATACACCCAGGGCGAGCAGACACCGCTCTCCAGCCGCACCATCTCCAACTCCGGCTGCAGTTTGACGGTAGCGCGGGGAGCCCCCCTTGTCCCCTGCGGGTGACTCCTCGACCATGCGACAGTGGTGCCTTCCTGCTGTGGCTCCACGCGCCGAACCGCTCCCTACGGGCCGATTATCACATGTCAGGATGGAGTGTTGTGATGGGGAGCCGCGCTACACCATTGAACAGATCGACCTGCTCCAGCGCTTAAGGCTGTCGGGGATGACCAAACCTCAGATCATTCAAGCCCTTGAGTCTTTAGACAGGCTCGATCCGGACCATCGTACCCCATGCTGCAACAATCACTCAACTCAACCCAGCGCCCCTACCTCCGCAGCCCCTGCTGCCCCgtcatcctcctcctcatcttccTCGTCTCTTACCTCAGCCACCACGCAAACCCCTGTAATTGATGCTGCATTATCACCCAGTAACAGCTACGATGCCTCACCTCCACCCCTGTACCCGCCCAGTGGAGTTCAGAGATCGTTCAGTTACGATTTGGCAGAGGAGGACTGGGATCTGGAGGAGAAGGTGGAGGAATACATGAGGAGGGACAGCAACCTTGTGAAAGAAGAAATAAAGGCTTTTCTTAATAACAGAAGGATCTCCCAAGCAATTGTTGGCCAAGTCACAGGTATTAGTCAGAGCTACATTTCCCAGTGGCTCCTGCAGCAAGGACTGGAGATGAGCGACTCTAAACGCAGGGCATTTTATCGCTGGTACCTGCTGGAGCGCAACAGCCCAGGAGTCAGATGGAGTGAAAACCAGCATGTTCAGGTGCCCAGGAGCAGGACTGACTCTCCCTGGATCAGGCAGAGAGAATTGCTGATGCACCTCCTCCCCTGGTACTCTGCTCACCAGTCTCAGCCAGGCGCTACATTGTCCATGCGGTCCCTGGTTAAAGAGGAGCCTGACTGGAGGTTGGCTGGAAGCCCTGCGGACCGGGCAGCGGTTGGACCTTTCAGACTGCGGAGAGGTAGTCGCTTCACCTGGAGAAAAGAGTGCCAGTCAATCATGGAGAGTTTCTTTATCGAGAATCAGTATCCCGATGAGGCCAAAAGAGAGGAAATTGCCAATGCCTGTAATGCTGTCATTCAAAAGCCTGGATGCAAACTCTCAGAGTTCGAACGAGTCACTGCGCTCAAAGTGTACAACTGGTTTGCTAATCGGAGGAAGGAGATGAAGAGACGTGCCAACATAGAGGCTGCCATACTAGAGAGTCATGGGATAGAAGTGCCGAGCCCCAGCTGCCACTCCAACAGCGAAGAGGTCGAGACTCAGGAGTTTGGAGATCAAGTCACGAGTCAGCGCTTCTCTGAGCAGGAGGATCTCTCTCAGAGAAAAGACATTGAGCCAGAAGGTGTCATGCTACCTCCCGTGGAAGTGGTGTCTCTTCCCAGCCCGGCCTGTCAACTAGTGGAGCGAAAGCTGGATGAATCGAAAAGGGAGGCTACCGATGACGATTAACCAATGAGTCGAGtcaggctgcgtccaaaatcgcttacttccatactatatagtacgataaaaacagtatgcgagctgagtagtattcaaaaaacagtatgcgagaagtatctGGATGACCTATTACTTTCCAGCGAGATTATGAAGTGCGCATCTAATGGACGATATGGTATCCCATGAGGcaccacgagagaattcatgaataggagttAAGTGACGCAGGTGGGTCACATGATAATGAGAAATGGCGGATGTAGCACATCCAAGTTCCATTCACACTaatcacattcatactgtatagaacaatTTTTTCTAACAGTTGTGTAGTAAATTGAAATTCCAGtgtagtacctactgagtagtaggcgatttcggacgcagccatattTTTGGTCCAAAGCGGCTTGACGTTTTTTTCACAGCCAAGCCTGACTCTCTGGTGCCTCTAGTGGTAGGGAGGCCACTGTATCAATGTATCTACAATAATCACGCTTGTAGTAACGGCAATATTTACTCTATTCAGTATATCGTGCATTCCAAGACAGTCTTAACGCTTCCCCGTATAAGGGAAAGATGCGTAAAAGTGCAAACTagtaactttttttcttcttgcgtaagctcttttcttttatttctcaCTATAACGTCTGTGCAAGCGAGCAGTGTAGAGAAACCTGCAGGACAGGTGTTTAATTTGACAGAAGGGGTGCGTTGAATTCAGTTTGAAGGAGCTCAGTAGTCTCGTAATTGTCATATGCAATAGTTAAAAGACAAGATGGGATGGTACACCCCTGAAAGATACACCAACTCAGGTAGAACTAAACTTGGCAATTGAACGAGAAGATCACCATTGTGGAAATCAAAGTATTTCCCACAGTTAATGGTTCACTGGGAAGATATGGGTCCCATTTCATCAAGCATAACAGGCTGTGTacatattgtttttctttttttactttcaaaTGCGATCTGAAATTAATATTCAGATAATCATAGCTCAGTTTTTGTATACACGACGATTGTAAGCTCTTTGTATCCAGCCACTTAAGCTAATCTCACCCTGACTAGTGTGAGGGGTCTAAAATGCTTCAAAAGTTTCCCCCCCTTAAGGTGTTATTTGCTATAAGCATCATTTACTTACCTCTTGAATAAGGTAATGCAGTATGTAAAATGACAAGTATATCAGCATCTAATGCAACAAGCTGCTTTTCATTGGACTATTGGATATCCACTTTTTGATTTTATGTGTCTTAACGAAAGCCAAAGCAAGGCAAGTTGTAAAACAGAAGATTTTACATGGACTAAATGTTTGCTTAAGGCACATCACCGTGCCTCGGTGAGAAGCGCTTTGAGCGTGTAAAGGCTTTAAGCTGCACACACAGTATGATTATTCTGGCCTATCAGCTCTGTACACAAAAACAGTATGCAATGCTGCGCGCTGTCCAGGGCCCTTACTCTGTGCTTTTTCCTAATgacacaaaataaaatcaataaacaagCAAA

Function

GO:

id name namespace
GO:0051973 positive regulation of telomerase activity biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0032212 positive regulation of telomere maintenance via telomerase biological_process
GO:0005634 nucleus cellular_component
GO:0042162 telomeric DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003691 double-stranded telomeric DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-417 Predicted to enable double-stranded telomeric DNA binding activity. Predicted to act upstream of or within positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in lateral line ganglion. Orthologous to human HMBOX1 (homeobox containing 1).

Ensembl:

ensembl_id ENSDART00000134149

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029371 lncRNA downstream 1606142 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 1736706 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 1849299 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 1948071 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030292 lncRNA downstream 2101302 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029413 lncRNA upstream 23933 32624756 ~ 32632138 (-) True XLOC_014907
TCONS_00029429 lncRNA upstream 657749 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 669754 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00030295 lncRNA upstream 1181960 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 1587369 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00029404 mRNA downstream 53247 32505747 ~ 32518556 (-) True XLOC_014905
TCONS_00029403 mRNA downstream 71430 32495419 ~ 32500373 (-) True XLOC_014904
TCONS_00029402 mRNA downstream 77937 32488572 ~ 32493866 (-) True XLOC_014903
TCONS_00029401 mRNA downstream 84334 32472996 ~ 32487469 (-) True XLOC_014902
TCONS_00029398 mRNA downstream 421725 32051089 ~ 32150078 (-) False XLOC_014900
TCONS_00029410 mRNA upstream 21354 32622177 ~ 32641725 (-) False XLOC_014907
TCONS_00029409 mRNA upstream 21354 32622177 ~ 32641725 (-) False XLOC_014907
TCONS_00029411 mRNA upstream 22407 32623230 ~ 32710922 (-) False XLOC_014907
TCONS_00029416 mRNA upstream 165600 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029415 mRNA upstream 165600 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029400 other downstream 241173 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 421692 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029389 other downstream 987402 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029381 other downstream 1487830 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029380 other downstream 1490552 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029412 other upstream 23933 32624756 ~ 32625879 (-) False XLOC_014907
TCONS_00029414 other upstream 48844 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029434 other upstream 771541 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029436 other upstream 1230546 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029437 other upstream 1232697 33833520 ~ 33835368 (-) True XLOC_014921

Expression Profile

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