RNA id: TU311134


Basic Information

Item Value
RNA id TU311134
length 1884
lncRNA type read_through
GC content 0.43
exon number 2
gene id G274056
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54620533 ~ 54659687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTTAATGTGTAACAGGCTGTTCTACTGGGTTCTCACAGAGGCTGTATGAGTTACCTCTCTTTGTCAGGGAAGGGGATAGCAGTGTAAAGCTCCTGTAGTTTGGTGTTGGCCACTGCTACCTGTGTGCTGGTGTATGGTAACAGCACCTTCTTGAACTGGGGATAGCAAAGTCAAATCTCAGTCAGGAAACAGTCAGCAAACGTGGTACTTATATCAAACAAAGAATTGTGAGGGTCTATTGTATCATACAGGTGAGCCCATGGAAATTAAACTTTTTTTCAGAATTGAAATGTCTCAATAGGGCAGCAAACAAACATTTTGTAAGCATGCTGTACATGAAAACAACAATTGTACTTAGTACCCAATGAAAATAAACATATGACACACTAAACCAATTAAGTAGCATTGGTTTGTCCACATAAAAGTCCTTCTAGTTCTGTGTTTTTCACCTCATCACAGATGTCAGTGAGTCTGTCCCCACATGAGCCGTAATGGAGTCTGAAGTTATCAGCAAAGCCAAGCAGAGCCATGCAGCCGCAAGGCTTCAGGACCCGACCTGCCTCCAAGAGGAACCGCTGCTGGTCAAACCAATGGGCCGCTGAGGCTGCAGTCAGTAGGTCCACAGAAGCATCCGGAAACGGCAGCTCTTCAGCTGTCCCTTTCCTGTATAGTAAGTATTAAGACACAGCACCAAACATTGAGGATTTCTACATAAACTAACATATTAACTAGGGGCCTATTGAAAGTGGGAAGCTACTGCTGACCTTTGTGCTGAGTGTAATTGACCGTCTCTGCAGATTGTCATCACTGTTTCTTTTTAAACAACATACACGTTGGTTTTACATTTactcccattcaaaatcctattatccctaaaccctaaccctaattctaaccctaacccctaactaaacctaaccctaaccctaatcctaacccttacccaaaaCCAAACTCTAAAATAGCAGTTTTTCTTAATGTATGGGGAACTgaaaaatgtccccacttgttaCATTTTCAAAAGGATAGTAAAGttaaacacacatagacacattCAAATACCTGTAGGTGATGTTGTTGAACCCTGCCACTGCCCTGGCCTCCTCCAGTTGGCACTCGCTGATGTCAATGCCCACCACCTCCTGGAAGTGTGGGGCCATCAGGCGTGAGTTCTGCCCCGTCCCACAGCCCAGGTCCACAGCTAGGGCATGAGGCTGGACTTTCTGAAGAGAGGGGACCAGTGAGACACTATATAATTAGCCTTCACTAAAGGAGAGTGATAGATAGTGATAGTGTAAATGTGATGTTCAATATAGATAATATACATTACCAGTTATGtatatgttattttatagttttgatgttttcactattattctacaatgtagaaaatataaaaaataaagaaaaacccttgaatgggttggtttgtccaaacttttgatagggtagcctagtggttagagcgttggactattaaccggaaggttgcaagttcaaattcccgagctgacaaagtacaaatctatcgttctgcccctgaacaggcagttaacccactgttcccaggccatcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaataaatattaaactCTGATATCACCTTCCTTTCCAGGTAATGCAGGATGATGTATCTGATCTCCTCTGGGGGTACAAAGCGGTACCTCTGGTAGATGGCGGCATGGTGTTTCTCCTCAAACATCCGGCAGGTCATGGTGCTCTGCTGTCGTCTGCTCCGCTAGCTTAGTGCTCCTTCCAGCTTGCAGTGACtcagcagagacacagacacagagactgatCTACTCCTTCACTAGGATCGGTCAATCATTac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311136 lncRNA upstream 21217 54620533 ~ 54622052 (+) False G274056
TU311064 lncRNA upstream 137464 54504114 ~ 54505805 (+) True G273989
TU310883 lncRNA upstream 325450 54251703 ~ 54317819 (+) True LOC110520208
TU310882 lncRNA upstream 418122 54212480 ~ 54225147 (+) False LOC110520208
TU310846 lncRNA upstream 468462 54174571 ~ 54174807 (+) True G273801
TU311208 lncRNA downstream 28517 54684846 ~ 54689224 (+) True LOC110520222
TU311608 lncRNA downstream 70468 54726797 ~ 54727010 (+) True G274449
TU311617 lncRNA downstream 77040 54733369 ~ 54733684 (+) True G274458
TU311618 lncRNA downstream 77969 54734298 ~ 54788327 (+) True G274459
TU311684 lncRNA downstream 140949 54797278 ~ 54797495 (+) True G274525
XM_021597373.2 mRNA upstream 205908 54365929 ~ 54437361 (+) True LOC110520210
XM_021597368.2 mRNA upstream 277872 54318683 ~ 54365397 (+) False LOC110520209
XM_021597380.2 mRNA downstream 12521 54668850 ~ 54672399 (+) True LOC110520220
XM_036974611.1 mRNA downstream 16903 54673232 ~ 54677914 (+) False LOC110520222
XM_036974610.1 mRNA downstream 16904 54673233 ~ 54689498 (+) False LOC110520222
XM_021597383.2 mRNA downstream 23719 54680048 ~ 54689498 (+) False LOC110520222
XM_021597385.2 mRNA downstream 203191 54859520 ~ 54931543 (+) True LOC110520223
TU310076 other upstream 801652 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 984586 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 990838 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 991117 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 1306743 53291330 ~ 53336526 (+) False LOC110520190
TU311754 other downstream 218070 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 718217 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 718217 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 1243865 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 1259000 55915329 ~ 55916133 (+) False G275553

Expression Profile