RNA id: TU311690



Basic Information


Item Value
RNA id TU311690
length 263
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G274531
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54808819 ~ 54809081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGGGGgcatatttgtttgtttgtttgcataGAATCTGAAATGCATAGGTGTAGAAGAGAATGGGCATGCATATGCAAAATCAGTGGTGTACATTTAACTCAAAGTGTCAAATGTTCACTATTTtcagtgaacatatgggtcccaCTGTACTGGTGTTAAAATAACACTTTTGAAAGTCTTTAAGATTTAACTATGTTGCAGTGTTCCCCATTCAACTCTTATAGTGTTCAAATGAACTTGATTGTGATGTTTGCATAGCTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311488 lncRNA downstream 130707 54669362 ~ 54678112 (-) True G274339
TU311571 lncRNA downstream 201447 54607167 ~ 54607372 (-) True G274412
TU311333 lncRNA downstream 491033 54315329 ~ 54317786 (-) True G274208
TU311321 lncRNA downstream 519548 54281582 ~ 54289271 (-) True G274198
TU311243 lncRNA downstream 579642 54174850 ~ 54229177 (-) True G274126
TU311695 lncRNA upstream 5221 54814302 ~ 54814543 (-) True G274536
TU311697 lncRNA upstream 10187 54819268 ~ 54819476 (-) True G274538
TU311711 lncRNA upstream 21524 54830605 ~ 54831374 (-) True G274552
TU311723 lncRNA upstream 32626 54841707 ~ 54841923 (-) True G274564
TU312147 lncRNA upstream 50466 54859547 ~ 54860029 (-) True G274950
XM_021597378.2 mRNA downstream 149138 54646623 ~ 54659681 (-) False LOC110520215
XM_036974605.1 mRNA downstream 149138 54646623 ~ 54659681 (-) True LOC110520215
XM_021597375.2 mRNA downstream 162477 54639230 ~ 54646342 (-) True LOC110520214
XR_002472959.2 mRNA downstream 172341 54633738 ~ 54636478 (-) True LOC110520218
XM_021597379.2 mRNA downstream 184275 54617528 ~ 54624544 (-) True LOC110520216
XM_021597393.2 mRNA upstream 238437 55047518 ~ 55050859 (-) True LOC110520226
XR_005049721.1 mRNA upstream 262712 55071793 ~ 55122008 (-) False LOC110520227
XM_036974620.1 mRNA upstream 262770 55071851 ~ 55122008 (-) False LOC110520227
XR_005049715.1 mRNA upstream 264412 55073493 ~ 55122013 (-) False LOC110520227
XM_021597395.2 mRNA upstream 322313 55131394 ~ 55146386 (-) False idh1
TU311493 other downstream 126014 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 1557735 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2100003 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3208589 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 3208921 51597399 ~ 51599898 (-) False il1rl1
TU312299 other upstream 294413 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 601062 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 601062 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2461701 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2593903 57402984 ~ 57403575 (-) True G277673

Expression Profile