RNA id: TU312147



Basic Information


Item Value
RNA id TU312147
length 483
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G274950
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54859547 ~ 54860029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCTCCAGCGAAGGCATCGCAGAGAAATAGCCAGTATCATGCACGAGTTGGAGTTCCTGAAAAATACTGTAATTCGCCAACACGTCCATGTTGATGCGCGATTTGAAAACAATTTACTTTGATCcactggagaaaaaaaagaacCCTACTTGTGTATGGTAGGTCTAAGGggttaacaaaaaaaatgttattcAGATACTCCTCGTGCGTCTGTCCGTGCACCAGAAAGTATAGCTCTATATGCCACTGGAACCAAATAATACGCACAATAACCACTATAAAGAAATATAAAAATAATAGTTGAATACTGTGTCACTGAATTGCAATCCTTTTTCTCTGGTGCTAACTATCAGGTCTTCAGTCCAGGAGTGGGATGCCAACTCGGTGACTTGAAACGTCCATCTATTTCCGCATTACCAGATTGCAATCTTCGCTCTATAAATTCCAGGTTGCTTTTCCCCTGGCTGCCGTGGCTTCAGCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU311723 lncRNA downstream 17624 54841707 ~ 54841923 (-) True G274564
TU311711 lncRNA downstream 28173 54830605 ~ 54831374 (-) True G274552
TU311697 lncRNA downstream 40071 54819268 ~ 54819476 (-) True G274538
TU311695 lncRNA downstream 45004 54814302 ~ 54814543 (-) True G274536
TU311690 lncRNA downstream 50466 54808819 ~ 54809081 (-) True G274531
TU312150 lncRNA upstream 4236 54864265 ~ 54864533 (-) True G274953
TU312161 lncRNA upstream 22852 54882881 ~ 54883112 (-) True G274959
TU312164 lncRNA upstream 26872 54886901 ~ 54887168 (-) True G274962
TU312172 lncRNA upstream 35229 54895258 ~ 54895551 (-) True G274970
TU312173 lncRNA upstream 35741 54895770 ~ 54896333 (-) True G274971
XM_021597378.2 mRNA downstream 199866 54646623 ~ 54659681 (-) False LOC110520215
XM_036974605.1 mRNA downstream 199866 54646623 ~ 54659681 (-) True LOC110520215
XM_021597375.2 mRNA downstream 213205 54639230 ~ 54646342 (-) True LOC110520214
XR_002472959.2 mRNA downstream 223069 54633738 ~ 54636478 (-) True LOC110520218
XM_021597379.2 mRNA downstream 235003 54617528 ~ 54624544 (-) True LOC110520216
XM_021597393.2 mRNA upstream 187489 55047518 ~ 55050859 (-) True LOC110520226
XR_005049721.1 mRNA upstream 211764 55071793 ~ 55122008 (-) False LOC110520227
XM_036974620.1 mRNA upstream 211822 55071851 ~ 55122008 (-) False LOC110520227
XR_005049715.1 mRNA upstream 213464 55073493 ~ 55122013 (-) False LOC110520227
XM_021597395.2 mRNA upstream 271365 55131394 ~ 55146386 (-) False idh1
TU311493 other downstream 176742 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 1608463 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2150731 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3259317 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 3259649 51597399 ~ 51599898 (-) False il1rl1
TU312299 other upstream 243465 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 550114 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 550114 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2410753 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2542955 57402984 ~ 57403575 (-) True G277673

Expression Profile