RNA id: TU312172



Basic Information


Item Value
RNA id TU312172
length 294
lncRNA type intronic
GC content 0.43
exon number 1
gene id G274970
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54895258 ~ 54895551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGAGAGCCAGTCAAAACAGCATTCACTGCTCAACATAAACAAGCATTTGATTCACTGGTTTCTCTCTGTTTACAGCCGCCTCCACAGTATATCCTCTTTTCTTTTTGTAATGTTTGGGTAAATGCATTTGTTCTGCTGGCAGGTAAGGGCACAACAGAGGTCCCTCGACATAATGGGAGTAGTGGATAAAAAAGCAAGCAACCTTTCATTGACAGAACAGTAAGCAAGCACACTCACAACAACCCAGCATTACAGTATTGTGTTGGGACATCGTGTAAGGTTCTCCTTACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312164 lncRNA downstream 8090 54886901 ~ 54887168 (-) True G274962
TU312161 lncRNA downstream 12146 54882881 ~ 54883112 (-) True G274959
TU312150 lncRNA downstream 30725 54864265 ~ 54864533 (-) True G274953
TU312147 lncRNA downstream 35229 54859547 ~ 54860029 (-) True G274950
TU311723 lncRNA downstream 53335 54841707 ~ 54841923 (-) True G274564
TU312173 lncRNA upstream 219 54895770 ~ 54896333 (-) True G274971
TU312213 lncRNA upstream 34145 54929696 ~ 54933800 (-) True G274996
TU312242 lncRNA upstream 104632 55000183 ~ 55002557 (-) True G275020
TU312273 lncRNA upstream 139046 55034597 ~ 55109651 (-) True G275045
TU312293 lncRNA upstream 173088 55068639 ~ 55072044 (-) False LOC110520227
XM_021597378.2 mRNA downstream 235577 54646623 ~ 54659681 (-) False LOC110520215
XM_036974605.1 mRNA downstream 235577 54646623 ~ 54659681 (-) True LOC110520215
XM_021597375.2 mRNA downstream 248916 54639230 ~ 54646342 (-) True LOC110520214
XR_002472959.2 mRNA downstream 258780 54633738 ~ 54636478 (-) True LOC110520218
XM_021597379.2 mRNA downstream 270714 54617528 ~ 54624544 (-) True LOC110520216
XM_021597393.2 mRNA upstream 151967 55047518 ~ 55050859 (-) True LOC110520226
XR_005049721.1 mRNA upstream 176242 55071793 ~ 55122008 (-) False LOC110520227
XM_036974620.1 mRNA upstream 176300 55071851 ~ 55122008 (-) False LOC110520227
XR_005049715.1 mRNA upstream 177942 55073493 ~ 55122013 (-) False LOC110520227
XM_021597395.2 mRNA upstream 235843 55131394 ~ 55146386 (-) False idh1
TU311493 other downstream 212453 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 1644174 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2186442 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3295028 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 3295360 51597399 ~ 51599898 (-) False il1rl1
TU312299 other upstream 207943 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 514592 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 514592 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2375231 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2507433 57402984 ~ 57403575 (-) True G277673

Expression Profile