RNA id: TCONS_00029409


Basic Information

Item Value
RNA id TCONS_00029409
length 3139
RNA type mRNA
GC content 0.37
exon number 5
gene id XLOC_014907
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32622177 ~ 32710922 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGACCAGGGGCCTTGGTGTTGTCACTGCGACCACAGAGACGTATCATCATGGGAAAACAGAACAGCAAACTCAGGCCTGAGATGCTACAGGACCTGAGGGAGAACACAGAGTTTACTGACCATGAGCTGCAGGAGTGGTACAAGGGGTTTCTGAAAGACTGTCCCAGTGGACACTTGAACGTCGAGGAGTTTAAGAAGATCTATGCCAACTTCTTCCCGTATGGTGACGCCTCGAAGTTCGCAGAGCATGTCTTCCGTACATTTGACACCAACAACGACGGCACCATCGATTTCCGGGAGTTCATCATTGCTCTGAGCGTGACGTCACGGGGAAAACTGGAGCAGAAGCTGAAGTGGGCCTTCAGCATGTACGATCTGGATGGCAACGGTTACATCAGCCGCGAGGAAATGCTAGAGATCGTGCAGGCCATTTATAAGATGGTGTCTTCTGTGATGAAAATGCCTGAGGATGAATCCACACCAGAGAAGAGGACAGATAAGATATTCAGACAAATGGACCTGAACAATGATGGCAAGCTGTCTTTGGAAGAGTTCATAAAAGGTGCCAAAAGTGATCCCTCCATTGTGCGGCTACTGCAGTGTGACCCCAGCAGCGCTTCGCAGTTTTGAGTCGCTCCAGACAACCGGCACTAAATAAAGGACATGCATACATCTGAATAACAAAGACAACACCTGCCAAGACAAGATCTTCTGTCTGCTGCGTGTCATCTGGCCTTGCCTCTGCAGAAGCTGGCGGAGTTTTcgactctaaaaaaaaaaagctgatcctGTTCCAGAGTCCAGATTATTTTGGAAAGGAATGTTCCTTTTTAGGAATCGTGCAGTGCATGCGCTCCCGAGCCTCTTGTGTTTCAAATCTGTGCTGTTTTGTTTCTCTTCTCCCTTTGTTTTGTGAGGGCACAGCTCCACTTTTTATATcgatatttatgtgtatatacagtataaatgcatATAGAACCATGTTAGGACTACGAAGGAAGGCAGTTATAGGCGTCTTTTTACTCGCGTGCATCTTACGGCAGTATTATGTAGCTTCAGACAGTATCCAAATCTTAGCCTCCTGCTGACCCGCGATGGACTGATGGACTGAATGTTGGGATTTTTCCGCTCTGGCGctcatgatctttattttttacaaagagAAGGCTGAGGACCCCATTCTTGAATTCTGTTCATTTGGTTTGCTGTAAATACATGGTTTGCTtccatatttctttatttattttgatttcttttttatgtttatggTGTGTATTTTCGTTATTGTTGAACCGAGATGTGAGATAAttcaaagcttttatttttatttttggcataCATTCCGCTGTGTTTTGAACGGAGGACACTGGTAGCACATATCATTTGAAGCGCTTCATCTGTGTGTCTGCGGTTATGCGCGTTTGTTTGTATACGCAAGAGTGAAGGTTTGCATGTTCTGGCgtatgtgtgcgtgtctgtgctACGTTTATAGTATCACTTTGTGTAGTTCTTTATGATATCTTTGTATGCAAGTACGTTTTTGAAACCCTCGATTTGAAGCAGCAAACTCGTGACTTTATCCTGCGGCAACTTTACCCTGCGTCTTATGGTACTCAAAATCATCACTGTTAGGTTTCCATTAAACAACATAGACAGGAATGTACAACACTATAATTTATGATCATGTTTCACCTTTAGATAAAGTCTATGAATACTGAAAGTGATCACTAAGGGCTTACTTCCACTATTGAATGAACAGGTGTAAAGAGAACGGCACTGCTTatgagttttctttttgttttatgcaACGACTGACATTCCATGACCTGAATTCTCCAGGTGCTCCTGCTTTATACAAACACATTAGCTCATGAACTCCATACATGCCCACACTCCCAGTACGCGTGTAGCTCTCACTTTTGCTGGCATCCGTGTTGCTTCCATATTTGTACCGAGACCATATTTGATGCTGCACCCTCTATGGCAACTTTTCCCTCTATTATGTTGCATGAAAACCTCATGCGAGGACATAATGATTGTCCCCTTTTACTGACGTTGATAAAATATACTTCTGTGTTTAGAATGTGTCTGAGAGTGATTCTTGCACAACGCTGATCTGTCTACTTATTGATCAACCTGGTCATGTGAGCACAAAGTGCAAATACTTATTTAGCAGGGTTGTGTGTCCTTCAAAGATGAACGGAGAATTCCTATAAAATTCTTTTAGATCTaatgtatggagccagatcagtctaaaaaattgtacatttaaaaaataatatgcatACATGCAGAGTAAAATTCACATTTACGAAATCCAATTCGTACATCTGtaaacaaacaatttatgaaTTCACAAgtgaaaatcataaatattttaaccaaattaattgtatttgtgaatagtgttttgaatttccgaattggatttgtatttttgaaacttttttgtttaaatttacgagttagatttgtgtgttttttaattgctatttttaattttatgaatcggatttgcatattaatgaattgtttacgaattggatttgcatatttttaaatcgttttttcaaatttacaaattggatttgcatatttataaattgtgttttgaatttacgaataggatttgcatatttttgaattgtgttttgaatttcaaattgaatgtgtattttttgaaatcatgttttgaattaacaaattggatttgcatattttcgAATAactttttgaatttacgaattggatttgcaaatttttttatataatttttgttatttagcaaattggatttgcgtattttttaaaaaaattattttgcaaattggatttgcatatttttgaataattttttgaaTTCACGTcttggatttgcatatttgttttatagttttttttttactttacggGTTGGATTTGcgtgttttaatcatttttgaattTAAGAGTTGAATTTGCGTCTTTTTTAAATTTtggattggatttgtgtatttttgaatcgttgTTTGAAAgttcaaattggatttgtgtatttttaaatttacgaactggatttgtgtgttttttagttgatttttaaatgtatgaattggatttgcatgtttttaataatttttttttgagtttactaatt

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-1683 Predicted to enable calcium ion binding activity. Is expressed in hatching gland; nervous system; neural rod; and neural tube. Human ortholog(s) of this gene implicated in torsion dystonia 2. Orthologous to human HPCA (hippocalcin).

Ensembl:

ensembl_id ENSDART00000165006

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029371 lncRNA downstream 1656516 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 1787080 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 1899673 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 1998445 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030292 lncRNA downstream 2151676 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029429 lncRNA upstream 616847 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 628852 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00030295 lncRNA upstream 1141058 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 1546467 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 1640161 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00029407 mRNA downstream 21309 32571806 ~ 32600868 (-) False XLOC_014906
TCONS_00029406 mRNA downstream 21354 32571803 ~ 32600823 (-) False XLOC_014906
TCONS_00029408 mRNA downstream 21539 32588891 ~ 32600638 (-) True XLOC_014906
TCONS_00029405 mRNA downstream 22039 32571727 ~ 32600138 (-) False XLOC_014906
TCONS_00029404 mRNA downstream 103621 32505747 ~ 32518556 (-) True XLOC_014905
TCONS_00029416 mRNA upstream 124698 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029415 mRNA upstream 124698 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029417 mRNA upstream 128889 32770614 ~ 32783373 (-) True XLOC_014909
TCONS_00029418 mRNA upstream 198418 32840143 ~ 32849036 (-) True XLOC_014910
TCONS_00029419 mRNA upstream 222852 32864577 ~ 32888758 (-) True XLOC_014911
TCONS_00029400 other downstream 291547 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 472066 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029389 other downstream 1037776 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029381 other downstream 1538204 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029380 other downstream 1540926 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029414 other upstream 7942 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029434 other upstream 730639 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029436 other upstream 1189644 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029437 other upstream 1191795 33833520 ~ 33835368 (-) True XLOC_014921
TCONS_00029439 other upstream 1205409 33847134 ~ 33850219 (-) True XLOC_014922

Expression Profile

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