RNA id: TU312032


Basic Information

Item Value
RNA id TU312032
length 207
lncRNA type intronic
GC content 0.41
exon number 1
gene id G274843
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55314410 ~ 55314616 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggggaccaactacatAGTAATGCCAttgttttggaatgagatgttcattGAGcaggtccacatacttttgatcatgtagtgtaccAGAGATTCTAACGATATCGACAGAAGTGGCTCTTCAATAATGACAATGGCAAACTGTTATTGAGTAATTATGACATAAGTGAGTGGTATAACACAGACATCCCTACTCCCTCCCTAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311996 lncRNA upstream 53192 55260236 ~ 55261218 (+) True G274809
TU311905 lncRNA upstream 168007 55135451 ~ 55146403 (+) True G274723
TU311901 lncRNA upstream 187895 55126201 ~ 55126515 (+) True G274720
TU311896 lncRNA upstream 194554 55119309 ~ 55119856 (+) True G274715
TU311895 lncRNA upstream 196843 55117248 ~ 55117567 (+) True G274714
TU312034 lncRNA downstream 1365 55315981 ~ 55316196 (+) True G274845
TU312035 lncRNA downstream 2064 55316680 ~ 55316889 (+) True G274846
TU312036 lncRNA downstream 5703 55320319 ~ 55320522 (+) True G274847
TU312039 lncRNA downstream 8133 55322749 ~ 55323075 (+) True G274850
TU312051 lncRNA downstream 27454 55342070 ~ 55342274 (+) True G274862
XM_036974614.1 mRNA upstream 269367 55021730 ~ 55045043 (+) False LOC110520225
XM_036974615.1 mRNA upstream 269367 55021730 ~ 55045043 (+) False LOC110520225
XM_036974617.1 mRNA upstream 269367 55021730 ~ 55045043 (+) False LOC110520225
XM_036974619.1 mRNA upstream 269367 55032850 ~ 55045043 (+) False LOC110520225
XM_036974616.1 mRNA upstream 269943 55021730 ~ 55044467 (+) False LOC110520225
LOC110520231 mRNA downstream 57143 55371759 ~ 55374858 (+) False LOC110520231
XM_036964963.1 mRNA downstream 66055 55380671 ~ 55388722 (+) True lcmt2
XM_036974635.1 mRNA downstream 91255 55405871 ~ 55411555 (+) True LOC110520234
XM_036974637.1 mRNA downstream 115577 55430193 ~ 55496588 (+) False LOC110504295
XM_036974636.1 mRNA downstream 117500 55432116 ~ 55496588 (+) False LOC110504295
TU311754 other upstream 439295 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 1472793 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 1655727 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 1661979 53648825 ~ 53652431 (+) False G272965
TU312073 other downstream 59930 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 59930 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 585578 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 600713 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 600896 55915512 ~ 55916133 (+) False G275553

Expression Profile