RNA id: TU312051


Basic Information

Item Value
RNA id TU312051
length 205
lncRNA type intronic
GC content 0.41
exon number 1
gene id G274862
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55342070 ~ 55342274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTATGAGTGACTATGTATCATCTGACCTTTTGAGACCCTGATCTATTGGTCACGTGTGTCATAGATCCACATGTCAGGGTCTCAAAAGGTCAGATAATACTGGATTGATGACTGGTTAGAGTtatggtgttcttaatgtttggtatactctgtgtgtgtgtgagggtattAATCTGCCAAGCTCCCAGCCTATATCTCTAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312039 lncRNA upstream 18995 55322749 ~ 55323075 (+) True G274850
TU312036 lncRNA upstream 21548 55320319 ~ 55320522 (+) True G274847
TU312035 lncRNA upstream 25181 55316680 ~ 55316889 (+) True G274846
TU312034 lncRNA upstream 25874 55315981 ~ 55316196 (+) True G274845
TU312032 lncRNA upstream 27454 55314410 ~ 55314616 (+) True G274843
TU312053 lncRNA downstream 4736 55347010 ~ 55347247 (+) True G274864
TU312054 lncRNA downstream 5611 55347885 ~ 55348141 (+) True G274865
TU312019 lncRNA downstream 11731 55354005 ~ 55355586 (+) True kcnh3
TU312015 lncRNA downstream 14508 55356782 ~ 55357693 (+) False G274828
TU312016 lncRNA downstream 14508 55356782 ~ 55357571 (+) True G274828
XM_036974614.1 mRNA upstream 297027 55021730 ~ 55045043 (+) False LOC110520225
XM_036974615.1 mRNA upstream 297027 55021730 ~ 55045043 (+) False LOC110520225
XM_036974617.1 mRNA upstream 297027 55021730 ~ 55045043 (+) False LOC110520225
XM_036974619.1 mRNA upstream 297027 55032850 ~ 55045043 (+) False LOC110520225
XM_036974616.1 mRNA upstream 297603 55021730 ~ 55044467 (+) False LOC110520225
LOC110520231 mRNA downstream 29485 55371759 ~ 55374858 (+) False LOC110520231
XM_036964963.1 mRNA downstream 38397 55380671 ~ 55388722 (+) True lcmt2
XM_036974635.1 mRNA downstream 63597 55405871 ~ 55411555 (+) True LOC110520234
XM_036974637.1 mRNA downstream 87919 55430193 ~ 55496588 (+) False LOC110504295
XM_036974636.1 mRNA downstream 89842 55432116 ~ 55496588 (+) False LOC110504295
TU311754 other upstream 466955 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 1500453 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 1683387 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 1689639 53648825 ~ 53652431 (+) False G272965
TU312073 other downstream 32272 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 32272 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 557920 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 573055 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 573238 55915512 ~ 55916133 (+) False G275553

Expression Profile