RNA id: TCONS_00029413


Basic Information

Item Value
RNA id TCONS_00029413
length 492
lncRNA type sense_over
GC content 0.48
exon number 3
gene id XLOC_014907
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 32622177 ~ 32710922 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGCCATTAGCATGTGCTTAGCGTGCTCGGTCGGTACCTTAGGCAGGTTTGGCAGATCTTCATTCTGCACGATAGTCTTGGACTAGCAGAAACGAGGGAGACTCTCTTCTCTGCGGGATTAACGAGTTAAATTTAACCGGGGTTTATCCCTGTGTGTGCAGAACGGCGGGATTATCCGCAAGCTCATGGAGGTTACAGTTGGCTGGCACTCAGAGATTGCAGCGTGTTGCATATTTTATCACAGCGGCTGCTTTTAAAAGGCCATTTATAAGATGGTGTCTTCTGTGATGAAAATGCCTGAGGATGAATCCACACCAGAGAAGAGGACAGATAAGATATTCAGACAAATGGACCTGAACAATGATGGCAAGCTGTCTTTGGAAGAGTTCATAAAAGGTGCCAAAAGTGATCCCTCCATTGTGCGGCTACTGCAGTGTGACCCCAGCAGCGCTTCGCAGTTTTGAGTCGCTCCAGACAACCGGCACTAAAT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029371 lncRNA downstream 1659095 30962723 ~ 30965661 (-) True XLOC_014885
TCONS_00029791 lncRNA downstream 1789659 30831190 ~ 30835097 (-) True XLOC_014883
TCONS_00030294 lncRNA downstream 1902252 30721012 ~ 30722504 (-) True XLOC_014880
TCONS_00030293 lncRNA downstream 2001024 30592319 ~ 30623732 (-) True XLOC_014879
TCONS_00030292 lncRNA downstream 2154255 30469970 ~ 30470501 (-) True XLOC_014876
TCONS_00029429 lncRNA upstream 626434 33258572 ~ 33268126 (-) False XLOC_014917
TCONS_00029432 lncRNA upstream 638439 33270577 ~ 33274989 (-) True XLOC_014917
TCONS_00030295 lncRNA upstream 1150645 33782783 ~ 33786703 (-) True XLOC_014920
TCONS_00030296 lncRNA upstream 1556054 34188192 ~ 34230285 (-) True XLOC_014927
TCONS_00030297 lncRNA upstream 1649748 34281886 ~ 34283008 (-) True XLOC_014928
TCONS_00029407 mRNA downstream 23888 32571806 ~ 32600868 (-) False XLOC_014906
TCONS_00029406 mRNA downstream 23933 32571803 ~ 32600823 (-) False XLOC_014906
TCONS_00029408 mRNA downstream 24118 32588891 ~ 32600638 (-) True XLOC_014906
TCONS_00029405 mRNA downstream 24618 32571727 ~ 32600138 (-) False XLOC_014906
TCONS_00029404 mRNA downstream 106200 32505747 ~ 32518556 (-) True XLOC_014905
TCONS_00029416 mRNA upstream 134285 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029415 mRNA upstream 134285 32766423 ~ 32804535 (-) False XLOC_014909
TCONS_00029417 mRNA upstream 138476 32770614 ~ 32783373 (-) True XLOC_014909
TCONS_00029418 mRNA upstream 208005 32840143 ~ 32849036 (-) True XLOC_014910
TCONS_00029419 mRNA upstream 232439 32864577 ~ 32888758 (-) True XLOC_014911
TCONS_00029400 other downstream 294126 32330513 ~ 32330630 (-) True XLOC_014901
TCONS_00029399 other downstream 474645 32078951 ~ 32150111 (-) True XLOC_014900
TCONS_00029389 other downstream 1040355 31583252 ~ 31584401 (-) True XLOC_014894
TCONS_00029381 other downstream 1540783 31080178 ~ 31083973 (-) True XLOC_014888
TCONS_00029380 other downstream 1543505 31079326 ~ 31081251 (-) False XLOC_014888
TCONS_00029414 other upstream 17529 32649667 ~ 32649781 (-) True XLOC_014908
TCONS_00029434 other upstream 740226 33372364 ~ 33372694 (-) True XLOC_014919
TCONS_00029436 other upstream 1199231 33831369 ~ 33834435 (-) False XLOC_014921
TCONS_00029437 other upstream 1201382 33833520 ~ 33835368 (-) True XLOC_014921
TCONS_00029439 other upstream 1214996 33847134 ~ 33850219 (-) True XLOC_014922

Expression Profile

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