RNA id: TU312498


Basic Information

Item Value
RNA id TU312498
length 1285
RNA type TUCP
GC content 0.43
exon number 2
gene id G275250
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55410143 ~ 55411487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTCTTTATTATAAACTTTTAATTGAAAAGTACATTTTCCCTCCTGTACTATAGCACATCCCATTATTCACAGTAGTCTCTTTCAGTCAGGAGGAGCAGTCCAAAGAACACAGggctgaaatggcaccctatgccctttaAAAGTGCACAACttctgaccagaaccctatgggagCGGGTCAAAAAGTAACACACTACTTAGGGAAAagtgtgccatttcagacacactcagtctgagaggagaggcagagcaaGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTAGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGGTGGATGGTGGTGGGAGGCAGAGCAAGAGGGTGGATGGTGGTGGGAGGCAGAGCAAGCTGGAGATGGAGTCTCCAGACGAGGATGATATCCTTGTCACCCTAACGAGGAGGCAGCTAGGTAGCTCCAGAAGTACACTCAGTGGCCTTTCTTTCAGCAGACAGAATGCTCACTCATAACCTTACACCACAAATAATACATCTAAACATCATCTAATTCAACAAAAGCAAAAAACTAAAAATGTTGTTTGTTCTTTCCTATTTACAAAGTGTTTTGACCGAATCTTTTAAGGTGTCGGAGGGGATAAAATCCCTCAAGGTTAAATTAAACGACCTAGTACAGTACCACATACATAAAACTGTTATCAGAACAGGGAGGGTGATAGTATTCCAGTCTTGCTGATGTCCATGAGAAGTTGTTGACTCCAGAGTCCTTTGATTCCAGGAAAGCTCCTCTTCTAGAGCTCAGTCAGGTGTGATGGGTTTAACATTGGAAATGGGAGCTTTCATGATCCAAGATGTATGTGAGTGGTTGACAATTAGTTGACATTAAAAAGGTATGTTGACTTGAAGATCCAAACTCTCCAAATTGAAGCAAATAAGTCATCTGCAATTTGAGGGGGAATTAAGGTGGCAGTAAAATAATTTTTGGGACAAATACAGCATTAAATATAACCAggacttctttaaaaaaaataacatcaaGCCACCTTcagaatataaaaaaataaaacaaatcaaccCATCCTGAGATCAAAAAATAAATACACCCCTAAGCGTGctcctttgtttgtgtgtgtgtttttttgtgtggcgCAGAACTCAGTCCAGACTGTCTTTTGGTGTGTCAGTATCCCTGTAGTCCATTGTAAACCTTCTGTACTGACGATTGTTTCAGAATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312496 lncRNA downstream 4438 55405505 ~ 55405705 (-) True G275249
TU312495 lncRNA downstream 5429 55404476 ~ 55404714 (-) True G275248
TU312491 lncRNA downstream 9670 55399803 ~ 55400473 (-) True G275244
TU312490 lncRNA downstream 11897 55397890 ~ 55398246 (-) True G275243
TU312488 lncRNA downstream 17194 55392257 ~ 55392949 (-) True LOC110520233
TU312502 lncRNA upstream 1310 55412797 ~ 55413164 (-) True G275252
TU312503 lncRNA upstream 1732 55413219 ~ 55413719 (-) True G275253
TU312506 lncRNA upstream 3986 55415473 ~ 55444161 (-) True G275255
TU312524 lncRNA upstream 33621 55445108 ~ 55446072 (-) True G275273
TU312525 lncRNA upstream 35442 55446929 ~ 55447731 (-) True G275274
XM_036974634.1 mRNA downstream 15140 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 18811 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 27982 55375915 ~ 55382161 (-) True LOC110520232
XM_036974625.1 mRNA downstream 38476 55357367 ~ 55371667 (-) False armc8
XM_036974626.1 mRNA downstream 38476 55357367 ~ 55371667 (-) False armc8
XM_036974642.1 mRNA upstream 180877 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 368016 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 368016 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 376914 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 376914 55788401 ~ 55821210 (-) True LOC110520238
TU312299 other downstream 290931 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 727338 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2159059 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2701327 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3809913 51597935 ~ 51600230 (-) True il1rl1
TU315090 other upstream 1859295 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1991497 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2172899 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 7303088 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9558062 64969549 ~ 64970755 (-) True G286522

Expression Profile